Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1636

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1635: 10003 - K18748 SSD1 protein SSD1, at 767214 to 771755 10003 mRNA_1636: 10004 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 772019 to 773712 10004 mRNA_1637: 10005 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 773895 to 775574 10005

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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771,034 + 10003 mRNA_1635 0.84 -1.3
771,427 + 0.1
771,456 + -3.4
771,487 + -1.4
771,580 + 1.4
771,761 - -0.4
771,892 - 0.8
771,899 - -1.6
772,036 + -0.5
772,037 - -2.1
772,046 - -1.2
772,181 - -1.8
772,185 - -0.3
772,339 - 10004 mRNA_1636 0.19 -0.4
772,355 + 10004 mRNA_1636 0.20 -0.9
772,363 + 10004 mRNA_1636 0.20 -1.3
772,365 - 10004 mRNA_1636 0.20 -1.0
772,447 + 10004 mRNA_1636 0.25 0.6
772,488 - 10004 mRNA_1636 0.28 0.2
772,644 - 10004 mRNA_1636 0.37 -1.6
772,762 + 10004 mRNA_1636 0.44 -1.5
772,944 - 10004 mRNA_1636 0.55 -2.8
773,061 + 10004 mRNA_1636 0.62 -0.4
773,346 + 10004 mRNA_1636 0.78 0.4
773,359 - 10004 mRNA_1636 0.79 -0.3
773,375 - 10004 mRNA_1636 0.80 -0.6
773,737 - -0.2
773,812 - -1.5
773,978 - -0.4
773,978 + -3.9
774,123 - 10005 mRNA_1637 0.14 -1.7
774,233 - 10005 mRNA_1637 0.20 -2.7
774,366 + 10005 mRNA_1637 0.28 0.3
774,419 + 10005 mRNA_1637 0.31 -1.3