Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1635

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1635: 10003 - K18748 SSD1 protein SSD1, at 767214 to 771755 10003 mRNA_1636: 10004 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 772019 to 773712 10004

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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766,315 + -3.9
766,328 - -2.4
766,600 + -0.6
766,603 + -2.4
766,908 - -3.0
766,909 + -0.6
766,909 + -1.6
767,051 + -1.7
767,053 - -3.5
767,178 - -1.0
767,189 - -0.7
767,966 + 10003 mRNA_1635 0.17 -2.1
768,476 + 10003 mRNA_1635 0.28 -2.1
768,483 - 10003 mRNA_1635 0.28 -0.5
769,727 + 10003 mRNA_1635 0.55 -1.6
769,771 + 10003 mRNA_1635 0.56 -2.0
769,784 - 10003 mRNA_1635 0.57 0.5
769,944 - 10003 mRNA_1635 0.60 -2.2
770,067 - 10003 mRNA_1635 0.63 -1.5
770,394 - 10003 mRNA_1635 0.70 -0.6
770,554 + 10003 mRNA_1635 0.74 0.8
770,913 + 10003 mRNA_1635 0.81 -1.8
770,994 - 10003 mRNA_1635 0.83 -0.3
771,012 + 10003 mRNA_1635 0.84 -2.9
771,034 + 10003 mRNA_1635 0.84 -1.3
771,427 + 0.1
771,456 + -3.4
771,487 + -1.4
771,580 + 1.4
771,761 - -0.4
771,892 - 0.8
771,899 - -1.6
772,036 + -0.5
772,037 - -2.1
772,046 - -1.2
772,181 - -1.8
772,185 - -0.3
772,339 - 10004 mRNA_1636 0.19 -0.4
772,355 + 10004 mRNA_1636 0.20 -0.9
772,363 + 10004 mRNA_1636 0.20 -1.3
772,365 - 10004 mRNA_1636 0.20 -1.0
772,447 + 10004 mRNA_1636 0.25 0.6
772,488 - 10004 mRNA_1636 0.28 0.2
772,644 - 10004 mRNA_1636 0.37 -1.6