Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1592

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1591: 9959 - K01835 pgm phosphoglucomutase, at 673406 to 675711 9959 mRNA_1592: 9960 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 676262 to 677615 9960

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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675,268 + 9959 mRNA_1591 0.81 -0.2
675,678 + 0.2
675,821 - -0.1
675,829 - -1.0
675,847 - 1.0
675,901 + 1.6
675,995 + -0.9
676,002 + -0.3
676,003 - 1.0
676,016 + -0.7
676,115 - -0.3
676,116 - 0.1
676,120 - -1.0
676,135 - 0.5
676,909 - 9960 mRNA_1592 0.48 -1.5
676,913 + 9960 mRNA_1592 0.48 -0.7
676,926 + 9960 mRNA_1592 0.49 -0.4
677,074 + 9960 mRNA_1592 0.60 0.2
677,086 + 9960 mRNA_1592 0.61 0.4
677,323 + 9960 mRNA_1592 0.78 -0.9
677,801 + 0.9
678,370 - 1.5
678,513 + -0.1
678,535 - 1.0
678,541 + 0.8
678,550 - -0.5
678,560 + -0.6
678,571 - -3.0
678,583 + 0.2
678,588 + 2.0