Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1588

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1587: 9955 - HMMPfam-Protein of unknown function (DUF3759)-PF12585, at 664438 to 664902 9955 mRNA_1588: 9956 - HMMPfam-Domain of unknown function (DUF202)-PF02656, at 665210 to 666583 9956 mRNA_1589: 9957 - Hypothetical Protein, at 666700 to 668966 9957

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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664,212 - -1.0
664,213 - 0.2
664,272 + -1.0
664,322 - -0.4
664,324 + -0.5
664,353 - -0.6
664,364 + -1.3
664,370 + 2.6
664,441 - -0.3
664,530 - 9955 mRNA_1587 0.20 -0.3
664,551 - 9955 mRNA_1587 0.24 0.5
664,682 - 9955 mRNA_1587 0.52 0.2
664,794 - 9955 mRNA_1587 0.77 -2.6
664,810 - 9955 mRNA_1587 0.80 -1.4
664,942 + -0.2
664,970 - -0.4
664,989 - 2.1
665,109 - 0.3
665,116 + 1.0
665,136 + 0.4
665,256 - 0.8
665,262 + -1.6
665,263 + -2.4
665,294 + -0.2
665,302 + -0.3
665,405 - 9956 mRNA_1588 0.14 1.3
665,452 - 9956 mRNA_1588 0.18 0.7
665,565 - 9956 mRNA_1588 0.26 0.4
665,581 + 9956 mRNA_1588 0.27 -0.3
665,589 + 9956 mRNA_1588 0.28 0.9
665,742 + 9956 mRNA_1588 0.39 0.0
666,727 + -0.5
667,153 + 9957 mRNA_1589 0.20 -1.0