Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1555

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1554: 9922 - KOG1611 Predicted short chain-type dehydrogenase, at 583831 to 584732 9922 mRNA_1555: 9923 - K18703 SUGCT succinate---hydroxymethylglutarate CoA-transferase, at 585061 to 586995 9923 mRNA_1556: 9924 - KOG3114 Uncharacterized conserved protein, at 587080 to 588305 9924

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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584,185 - 9922 mRNA_1554 0.39 -0.2
584,209 + 9922 mRNA_1554 0.42 0.5
584,760 + 1.3
584,909 - -0.6
584,914 + 0.9
584,974 - 0.0
584,994 - 0.7
584,999 + -1.1
585,004 + -0.3
585,011 + 0.1
585,020 - 0.3
585,021 - 0.1
585,023 + -0.0
585,037 + -0.9
585,164 + 0.1
585,304 + 9923 mRNA_1555 0.13 0.9
585,317 + 9923 mRNA_1555 0.13 0.1
585,616 + 9923 mRNA_1555 0.29 1.7
585,616 + 9923 mRNA_1555 0.29 -0.4
585,737 - 9923 mRNA_1555 0.35 0.4
586,017 - 9923 mRNA_1555 0.49 0.4
586,368 + 9923 mRNA_1555 0.68 -1.2
586,858 + 2.0
587,619 + 9924 mRNA_1556 0.44 1.3
587,660 - 9924 mRNA_1556 0.47 1.0
587,794 - 9924 mRNA_1556 0.58 -1.4