Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1500

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1499: 9867 - KOG1231 Proteins containing the FAD binding domain, at 455664 to 457570 9867 mRNA_1500: 9868 - K05770 TSPO, BZRP benzodiazapine receptor, at 458270 to 459039 9868 mRNA_1501: 9869 - Hypothetical Protein, at 459271 to 459744 9869

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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457,385 - -1.9
457,454 + -0.9
457,456 - 2.6
457,456 - -0.7
457,699 - 0.6
457,732 - -2.3
457,796 - 0.0
457,804 - 0.1
457,807 + -0.4
457,834 - 0.1
457,836 - 0.0
457,843 - 1.8
457,887 + 0.3
457,889 + -1.2
457,896 - 0.2
457,898 - 0.5
457,916 - 1.3
457,922 - -0.0
457,938 - -0.3
458,033 - -0.3
458,046 + 0.1
458,061 + -0.4
458,062 - -1.5
458,151 - -1.3
458,176 + 0.7
458,319 + 0.8
458,335 - -0.2
458,775 - 9868 mRNA_1500 0.66 0.6
459,070 - -1.4
459,183 + -1.2
459,198 - -0.5
459,205 - 0.5
459,209 + 0.3
459,216 - -0.7
459,225 + -0.2
459,243 - 1.5
459,243 - -0.9
459,244 - 1.2
459,245 - -0.1
459,256 - -1.0
459,257 + -1.9
459,270 - -0.8
459,313 - 0.5
459,326 + 9869 mRNA_1501 0.12 -0.8
459,329 + 9869 mRNA_1501 0.12 -1.2
459,339 - 9869 mRNA_1501 0.14 -0.6
459,342 + 9869 mRNA_1501 0.15 -0.6
459,351 + 9869 mRNA_1501 0.17 0.6
459,360 + 9869 mRNA_1501 0.19 -1.0
459,360 + 9869 mRNA_1501 0.19 0.4
459,461 - 9869 mRNA_1501 0.40 -1.5
459,468 - 9869 mRNA_1501 0.42 -0.0
459,471 - 9869 mRNA_1501 0.42 -0.0
459,478 + 9869 mRNA_1501 0.44 0.1
459,482 - 9869 mRNA_1501 0.45 -0.9
459,482 - 9869 mRNA_1501 0.45 2.2
459,485 + 9869 mRNA_1501 0.45 -0.8
459,487 - 9869 mRNA_1501 0.46 1.1
459,488 - 9869 mRNA_1501 0.46 1.8
459,488 + 9869 mRNA_1501 0.46 1.5
459,488 + 9869 mRNA_1501 0.46 1.2
459,492 - 9869 mRNA_1501 0.47 -0.4
459,504 + 9869 mRNA_1501 0.49 0.1
459,532 + 9869 mRNA_1501 0.55 -0.4
459,633 - 9869 mRNA_1501 0.76 -0.7
459,639 - 9869 mRNA_1501 0.78 -0.6
459,752 - 0.8
459,771 + 0.0
459,771 - -1.7
459,797 - -0.1
459,797 - 1.4
459,812 + -0.9
459,815 + -0.4
459,839 - 0.3
459,891 + -1.1
459,959 - 0.9
459,962 + 1.4