Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1499

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1498: 9866 - K11129 NHP2, NOLA2 H/ACA ribonucleoprotein complex subunit 2, at 454122 to 455195 9866 mRNA_1499: 9867 - KOG1231 Proteins containing the FAD binding domain, at 455664 to 457570 9867 mRNA_1500: 9868 - K05770 TSPO, BZRP benzodiazapine receptor, at 458270 to 459039 9868

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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455,264 - 0.6
455,357 - 1.3
455,401 - 1.5
455,402 - -0.7
455,405 + -0.3
455,411 - -0.5
455,414 - 0.5
455,415 - -0.1
455,420 + -0.1
455,420 + 0.7
455,424 + 0.0
455,427 - -1.1
455,429 - -1.9
455,442 + -0.2
455,447 - 0.0
455,475 - -0.9
455,509 + 1.8
455,528 - -0.0
455,532 + 1.0
455,556 - 0.1
455,559 - 0.3
455,565 - -0.4
455,574 - 1.2
455,578 - 1.6
455,578 + 1.2
455,578 - -0.6
455,633 - -0.0
455,707 - 0.4
455,709 + 0.6
455,866 - 9867 mRNA_1499 0.11 0.1
455,872 - 9867 mRNA_1499 0.11 -0.0
455,874 + 9867 mRNA_1499 0.11 -0.8
455,893 + 9867 mRNA_1499 0.12 2.1
455,927 - 9867 mRNA_1499 0.14 -0.4
456,053 + 9867 mRNA_1499 0.20 -1.0
456,131 - 9867 mRNA_1499 0.24 -0.7
456,347 + 9867 mRNA_1499 0.36 0.1
456,563 + 9867 mRNA_1499 0.47 0.6
456,629 + 9867 mRNA_1499 0.51 -1.4
456,732 + 9867 mRNA_1499 0.56 0.6
456,888 + 9867 mRNA_1499 0.64 1.5
457,385 - -1.9
457,454 + -0.9
457,456 - 2.6
457,456 - -0.7
457,699 - 0.6
457,732 - -2.3
457,796 - 0.0
457,804 - 0.1
457,807 + -0.4
457,834 - 0.1
457,836 - 0.0
457,843 - 1.8
457,887 + 0.3
457,889 + -1.2
457,896 - 0.2
457,898 - 0.5
457,916 - 1.3
457,922 - -0.0
457,938 - -0.3
458,033 - -0.3
458,046 + 0.1
458,061 + -0.4
458,062 - -1.5
458,151 - -1.3
458,176 + 0.7
458,319 + 0.8
458,335 - -0.2