Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1473

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1472: 9840 - HMMPfam-Zinc finger, C3HC4 type (RING finger)-PF00097,ProSitePatterns-Zinc finger RING-type signature.-PS00518,SMART-Ring finger-SM00184,SUPERFAMILY--SSF57850, at 383411 to 384622 9840 mRNA_1473: 9841 - KOG0254 Predicted transporter (major facilitator superfamily), at 385086 to 387836 9841 mRNA_1474: 9842 - Hypothetical Protein, at 388451 to 391356 9842

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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384,529 + -1.1
384,548 + 0.9
384,653 + -0.0
384,694 + 0.2
384,713 + -1.4
384,724 + 0.1
384,777 + 1.4
384,792 - -0.2
384,814 + -1.3
384,914 + -1.4
384,930 + 2.1
384,931 + 0.5
384,938 + -2.3
384,938 + -0.7
384,968 + 0.3
384,974 - 0.7
384,985 + -0.3
384,988 - 0.2
384,991 - -0.1
384,992 + -1.2
384,996 - -0.6
385,005 - 0.3
385,062 + 1.5
385,063 - -0.1
385,070 - 0.2
385,096 - -2.4
385,098 - 1.6
385,099 + 1.6
385,119 - 1.2
385,119 - 0.0
385,119 + -0.2
385,122 + 0.0
385,131 - 0.6
385,133 + 0.5
385,134 - -0.1
385,153 + -1.1
385,219 - 2.1
385,220 - -0.1
385,261 - 0.8
385,268 + -0.3
385,271 - 0.9
385,304 + -1.2
385,398 - 9841 mRNA_1473 0.11 0.3
385,406 - 9841 mRNA_1473 0.12 -0.5
385,423 - 9841 mRNA_1473 0.12 1.6
385,916 - 9841 mRNA_1473 0.30 -0.1
385,990 + 9841 mRNA_1473 0.33 -0.2
386,043 + 9841 mRNA_1473 0.35 0.2
386,162 + 9841 mRNA_1473 0.39 -0.2
386,318 - 9841 mRNA_1473 0.45 -1.4
387,160 - 9841 mRNA_1473 0.75 -0.7
387,475 + 9841 mRNA_1473 0.87 0.2
387,634 + 0.6
387,636 + 0.2
387,740 + -0.9
387,910 + -0.5
387,940 + 0.1
388,059 - 0.2
388,062 + 0.2
388,064 - -0.8
388,199 - -1.5
388,205 - -1.0
388,219 - -0.3
388,223 - -0.3
388,229 - -0.2
388,229 + 0.1
388,230 + -0.2
388,235 - 0.5
388,235 + -0.6
388,235 + 1.6
388,238 + -1.6
388,240 + 1.9
388,246 + 0.6
388,251 + -0.5
388,255 - -0.0
388,345 + 0.4
388,365 - -2.6
388,388 + 0.9
388,396 + -1.3
388,502 - 0.3
388,670 - -0.1
388,734 - -0.2
388,795 + 9842 mRNA_1474 0.12 0.6