Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1360

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1359: 9727 - K06018 PPN1 endopolyphosphatase, at 85771 to 88302 9727 mRNA_1360: 9728 - K01054 MGLL acylglycerol lipase, at 88622 to 90157 9728 mRNA_1361: 9729 - Hypothetical Protein, at 90771 to 91579 9729

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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87,713 - 9727 mRNA_1359 0.77 1.3
87,736 + 9727 mRNA_1359 0.78 0.4
87,769 + 9727 mRNA_1359 0.79 -1.9
88,292 + -2.3
88,298 - -1.5
88,415 - -1.9
88,416 + 0.6
88,434 - -0.4
88,457 - -0.1
88,468 + -2.1
88,568 - -0.1
88,576 - -0.2
88,585 - 0.6
88,603 + 0.0
88,604 - -0.5
88,727 + 0.1
88,736 - 0.1
89,033 - 9728 mRNA_1360 0.27 -1.0
89,050 - 9728 mRNA_1360 0.28 0.6
89,355 + 9728 mRNA_1360 0.48 1.0
89,532 + 9728 mRNA_1360 0.59 -1.6
89,685 + 9728 mRNA_1360 0.69 -2.5
89,697 - 9728 mRNA_1360 0.70 -0.6
89,965 + 9728 mRNA_1360 0.87 0.1
90,038 + 0.5
90,068 + -0.5
90,145 - -2.3
90,242 - -1.2
90,326 - -1.1
90,328 + 0.4
90,335 - -0.2
90,349 + 0.0
90,350 + 0.6
90,356 + -1.2
90,364 + -0.2
90,374 + 0.1
90,376 - -0.3
90,378 - 0.5
90,532 - -0.7
90,534 - 1.4
90,556 + -1.2
90,568 + -0.0
90,606 - -0.4
90,696 + 0.1
90,709 + 0.5
90,822 - -0.4
90,901 - 9729 mRNA_1361 0.16 0.2
91,118 - 9729 mRNA_1361 0.43 -0.1
91,123 - 9729 mRNA_1361 0.44 -0.7