Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1329

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1328: 9696 - SUPERFAMILY--SSF82708, at 5867 to 7721 9696 mRNA_1329: 9697 - HMMPfam-SUZ domain-PF12752,ProSiteProfiles-SUZ domain profile.-PS51673, at 8055 to 8960 9697 mRNA_1330: 9698 - HMMPfam-LCCL domain-PF03815,ProSiteProfiles-LCCL domain profile.-PS50820,SUPERFAMILY--SSF69848, at 9234 to 11606 9698

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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7,319 - 9696 mRNA_1328 0.78 0.2
7,321 + 9696 mRNA_1328 0.78 1.2
7,459 - 9696 mRNA_1328 0.86 -1.6
7,532 - 9696 mRNA_1328 0.90 0.3
7,702 - 0.5
7,712 - 0.7
7,723 - 0.1
7,723 - -1.8
7,740 + 0.4
7,796 + -0.1
7,851 + 0.1
7,936 - 0.7
7,968 + 1.0
7,968 - 1.3
7,976 - 2.3
8,393 - 9697 mRNA_1329 0.37 0.1
8,402 - 9697 mRNA_1329 0.38 0.9
8,435 - 9697 mRNA_1329 0.42 -0.8
8,577 + 9697 mRNA_1329 0.58 1.6
8,599 + 9697 mRNA_1329 0.60 0.5
8,603 + 9697 mRNA_1329 0.60 0.1
8,708 + 9697 mRNA_1329 0.72 0.1
8,856 - 9697 mRNA_1329 0.88 0.0
8,864 - 9697 mRNA_1329 0.89 -0.1
9,016 - 0.5
9,048 - 0.9
9,057 - -0.8
9,182 + 0.0
9,299 - -0.8
9,321 - -1.9
9,448 + -1.3
9,472 - 9698 mRNA_1330 0.10 -0.1
9,597 - 9698 mRNA_1330 0.15 2.1
9,731 + 9698 mRNA_1330 0.21 -0.9
9,864 + 9698 mRNA_1330 0.27 0.7
9,892 + 9698 mRNA_1330 0.28 -0.3