Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1218

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1217: 9585 - K10580 UBE2N, BLU, UBC13 ubiquitin-conjugating enzyme E2 N, at 672006 to 672875 9585 mRNA_1218: 9586 - SUPERFAMILY--SSF52047, at 673379 to 675043 9586 mRNA_1219: 9587 - KOG3202 SNARE protein TLG1/Syntaxin 6, at 675233 to 676117 9587

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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672,446 + 9585 mRNA_1217 0.51 1.3
672,625 + 9585 mRNA_1217 0.71 0.9
672,649 - 9585 mRNA_1217 0.74 -2.0
672,749 + 9585 mRNA_1217 0.85 1.3
672,755 + 9585 mRNA_1217 0.86 -0.2
673,063 - 0.3
673,063 + 0.7
673,080 - 0.1
673,233 + 3.2
673,235 + 0.1
673,268 - -1.2
673,404 - -0.3
673,462 + -1.7
673,875 - 9586 mRNA_1218 0.30 0.6
673,999 - 9586 mRNA_1218 0.37 0.4
674,006 + 9586 mRNA_1218 0.38 -0.3
674,848 - 9586 mRNA_1218 0.88 -0.0
674,994 - 1.2