Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1185

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1184: 9552 - KOG0143 Iron/ascorbate family oxidoreductases, at 599340 to 600971 9552 mRNA_1185: 9553 - KOG1399 Flavin-containing monooxygenase, at 601404 to 603765 9553 mRNA_1186: 9554 - K20410 MAPKAP1, SIN1 target of rapamycin complex 2 subunit MAPKAP1, at 603862 to 607168 9554

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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600,433 + 9552 mRNA_1184 0.67 -0.4
600,561 - 9552 mRNA_1184 0.75 0.0
600,741 - 9552 mRNA_1184 0.86 -0.3
600,893 + -1.2
601,052 - -1.2
601,147 - 0.2
601,176 + 1.7
601,177 + 2.5
601,186 + 2.6
601,197 - -1.5
601,204 + 0.1
601,205 + 0.2
601,211 - 0.6
601,217 - 0.3
601,359 + -0.9
601,502 - -0.2
601,519 + -1.5
601,610 - -0.6
601,705 - 9553 mRNA_1185 0.13 0.3
601,792 + 9553 mRNA_1185 0.16 -0.4
601,840 + 9553 mRNA_1185 0.18 -0.8
601,917 - 9553 mRNA_1185 0.22 1.8
602,125 + 9553 mRNA_1185 0.31 2.0
602,184 - 9553 mRNA_1185 0.33 0.4
602,221 - 9553 mRNA_1185 0.35 -1.1
602,226 - 9553 mRNA_1185 0.35 -0.1
602,531 - 9553 mRNA_1185 0.48 -0.1
602,718 + 9553 mRNA_1185 0.56 0.6
602,908 + 9553 mRNA_1185 0.64 -3.1
602,911 - 9553 mRNA_1185 0.64 -2.0
602,920 - 9553 mRNA_1185 0.64 -0.0
602,979 - 9553 mRNA_1185 0.67 -1.1
602,989 + 9553 mRNA_1185 0.67 0.2
603,066 + 9553 mRNA_1185 0.70 0.7
603,262 - 9553 mRNA_1185 0.79 1.1
603,282 - 9553 mRNA_1185 0.80 -1.5
603,283 - 9553 mRNA_1185 0.80 0.7
603,283 - 9553 mRNA_1185 0.80 0.4
603,304 + 9553 mRNA_1185 0.80 0.0
603,414 - 9553 mRNA_1185 0.85 -0.3
603,426 - 9553 mRNA_1185 0.86 0.9
603,526 - 9553 mRNA_1185 0.90 -0.4
603,565 - -1.6
603,697 - 0.2
603,752 + -0.4
604,074 + -1.0
604,101 - 0.3
604,351 + 9554 mRNA_1186 0.15 -0.2
604,465 - 9554 mRNA_1186 0.18 -2.0