Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1121

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1120: 9488 - KOG1612 Exosomal 3'-5' exoribonuclease complex, subunit Rrp42, at 448801 to 450033 9488 mRNA_1121: 9489 - K05389 KCNKF potassium channel subfamily K, other eukaryote, at 450183 to 453173 9489 mRNA_1122: 9490 - BLAST glycoside hydrolase family 28 protein [Tulasnella cal..., at 453460 to 456260 9490

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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449,275 - 9488 mRNA_1120 0.38 -1.1
450,208 - 0.6
450,394 - -0.2
450,476 + -3.9
450,627 + 9489 mRNA_1121 0.15 1.1
450,667 - 9489 mRNA_1121 0.16 0.8
451,224 - 9489 mRNA_1121 0.35 1.0
451,308 + 9489 mRNA_1121 0.38 -0.3
451,463 - 9489 mRNA_1121 0.43 0.3
452,061 - 9489 mRNA_1121 0.63 0.1
452,140 + 9489 mRNA_1121 0.65 -0.2
452,255 + 9489 mRNA_1121 0.69 0.2
452,812 - 9489 mRNA_1121 0.88 1.6
453,074 - 0.3
453,082 + -1.8
453,113 - 0.4
453,228 + 3.0
453,243 - 0.4
453,244 + -1.1
453,250 + 0.8
453,252 + -1.2
453,366 + 0.9
453,367 - 0.4
453,368 + 0.8
453,368 - -1.3
453,372 - -2.3
453,372 + -0.1
453,373 + -0.8
453,375 + 1.2
453,375 + -0.6
453,377 - 0.4
453,378 + -0.9
453,378 - -1.0
453,384 + -1.3
453,391 + -0.8
453,411 + 1.5
453,548 + -0.4
453,600 + -0.5
453,649 + 3.2
453,667 - 0.1
453,814 - 9490 mRNA_1122 0.13 -0.7
453,816 + 9490 mRNA_1122 0.13 -2.1
453,819 - 9490 mRNA_1122 0.13 -0.7
453,822 - 9490 mRNA_1122 0.13 -0.0
453,829 + 9490 mRNA_1122 0.13 -2.0
453,833 - 9490 mRNA_1122 0.13 0.6
453,836 + 9490 mRNA_1122 0.13 1.1
453,968 - 9490 mRNA_1122 0.18 -2.5
453,973 - 9490 mRNA_1122 0.18 0.1
453,979 + 9490 mRNA_1122 0.19 -1.1
453,999 + 9490 mRNA_1122 0.19 -0.6
454,007 + 9490 mRNA_1122 0.20 -0.5
454,014 + 9490 mRNA_1122 0.20 0.5
454,016 - 9490 mRNA_1122 0.20 0.7
454,027 - 9490 mRNA_1122 0.20 -0.9
454,032 + 9490 mRNA_1122 0.20 -1.7
454,083 - 9490 mRNA_1122 0.22 -0.8