Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1115

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1114: 9482 - KOG1396 Uncharacterized conserved protein, at 435382 to 439006 9482 mRNA_1115: 9483 - SUPERFAMILY--SSF52047, at 439344 to 441081 9483 mRNA_1116: 9484 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 441335 to 443528 9484

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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438,544 + 9482 mRNA_1114 0.87 -1.1
438,578 + 9482 mRNA_1114 0.88 2.0
439,143 - 1.4
439,209 - -0.2
439,302 - 1.9
439,304 - 0.4
439,311 + -0.1
439,319 + -0.5
439,324 + -0.6
439,605 + 9483 mRNA_1115 0.15 0.5
440,162 - 9483 mRNA_1115 0.47 0.4
440,180 + 9483 mRNA_1115 0.48 -0.8
440,182 + 9483 mRNA_1115 0.48 2.5
440,360 - 9483 mRNA_1115 0.58 -0.2
440,362 - 9483 mRNA_1115 0.59 -1.6
440,387 + 9483 mRNA_1115 0.60 0.4
440,577 + 9483 mRNA_1115 0.71 -0.0
440,616 + 9483 mRNA_1115 0.73 1.4
440,750 - 9483 mRNA_1115 0.81 -0.3
440,777 + 9483 mRNA_1115 0.82 0.6
440,944 - -0.3
441,080 + -0.5
441,088 - -0.1
441,179 - -0.6
441,233 + 0.0
441,339 + 0.1
441,359 - -0.8
441,360 - -0.2
441,396 - -0.1
441,488 + 2.6
441,511 - 0.7
441,568 + 9484 mRNA_1116 0.11 0.7
441,569 - 9484 mRNA_1116 0.11 1.0
441,576 - 9484 mRNA_1116 0.11 0.1
441,662 - 9484 mRNA_1116 0.15 0.5
441,668 + 9484 mRNA_1116 0.15 -0.6