Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1108

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1107: 9475 - KOG0123 Polyadenylate-binding protein (RRM superfamily), at 421636 to 422494 9475 mRNA_1108: 9476 - KOG1134 Uncharacterized conserved protein, at 422767 to 426748 9476 mRNA_1109: 9477 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 426954 to 427895 9477

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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422,400 - 9475 mRNA_1107 0.89 -0.6
422,564 + 0.4
422,568 + 0.4
422,674 + 1.8
422,705 - 1.1
422,753 + -0.8
422,864 + -1.1
422,866 - 1.7
423,016 + -0.6
423,051 + -0.1
423,241 - 9476 mRNA_1108 0.12 -1.6
423,590 - 9476 mRNA_1108 0.21 -2.3
423,853 - 9476 mRNA_1108 0.27 -1.4
423,904 - 9476 mRNA_1108 0.29 0.0
424,010 - 9476 mRNA_1108 0.31 -1.2
424,461 + 9476 mRNA_1108 0.43 0.2
424,666 - 9476 mRNA_1108 0.48 -1.3
424,843 + 9476 mRNA_1108 0.52 -0.4
424,926 - 9476 mRNA_1108 0.54 0.7
424,988 - 9476 mRNA_1108 0.56 -1.0
425,177 - 9476 mRNA_1108 0.61 -1.6
425,198 + 9476 mRNA_1108 0.61 -2.8
425,237 - 9476 mRNA_1108 0.62 -0.4
425,419 - 9476 mRNA_1108 0.67 1.9
425,836 - 9476 mRNA_1108 0.77 0.7
426,175 + 9476 mRNA_1108 0.86 0.0
426,297 - 9476 mRNA_1108 0.89 1.6
426,298 + 9476 mRNA_1108 0.89 -0.1
426,306 - 9476 mRNA_1108 0.89 -0.1
426,371 - -1.1
426,449 + -2.6
426,544 + 0.4
426,617 - 0.4
426,797 + -0.9
426,860 + -1.1
426,866 - -2.3
426,876 + 0.5
426,876 + 0.1
426,884 + 1.7
427,001 + 0.9
427,034 + 2.4
427,037 + 1.5
427,055 + 9477 mRNA_1109 0.11 -0.2
427,143 - 9477 mRNA_1109 0.20 -0.6
427,296 + 9477 mRNA_1109 0.36 -0.7
427,308 + 9477 mRNA_1109 0.38 -2.3
427,347 - 9477 mRNA_1109 0.42 0.1
427,355 - 9477 mRNA_1109 0.43 -0.2
427,472 + 9477 mRNA_1109 0.55 -0.2
427,508 + 9477 mRNA_1109 0.59 -0.1
427,559 + 9477 mRNA_1109 0.64 0.3
427,559 + 9477 mRNA_1109 0.64 -0.4
427,605 - 9477 mRNA_1109 0.69 0.6