Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_996

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_995: 9363 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 155513 to 160267 9363 mRNA_996: 9364 - K19791 FET3_5 iron transport multicopper oxidase, at 160516 to 163771 9364 mRNA_997: 9365 - K08735 MSH2 DNA mismatch repair protein MSH2, at 164007 to 168056 9365

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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159,742 - 9363 mRNA_995 0.89 -2.8
159,863 + 0.7
159,909 - 0.7
160,011 - -0.8
160,018 + 0.7
160,152 - 1.2
160,163 - -0.9
160,164 + 0.2
160,170 - 2.5
160,173 - -0.1
160,196 + -0.7
160,210 - -2.4
160,295 + -1.0
160,302 + -0.2
160,305 - 0.0
160,309 - -0.9
160,323 - -1.3
160,347 - 0.1
160,348 + -0.5
160,352 - -1.3
160,483 - 0.8
161,324 - 9364 mRNA_996 0.25 0.1
163,109 - 9364 mRNA_996 0.80 0.2
163,518 + -3.0
163,523 - 1.8
163,813 - -0.5
163,832 - 0.4
163,832 + -1.9
163,836 - 0.4
163,837 + 0.1
163,837 + -1.5
163,839 - 1.1
163,849 + -1.1
163,863 - -0.0
163,863 + 0.8
163,877 - -1.8
163,877 - 0.3
163,880 + -1.6
163,880 - -1.3
163,889 + 2.5
163,892 - -2.0
163,903 + -1.7
163,922 - 0.6
163,926 + -2.3
163,933 - -0.3
163,959 + 1.2
163,976 + -0.5
163,977 + 1.2
163,982 + -1.6
163,994 - -1.2
164,024 + -0.2
164,024 + -0.7
164,030 + 1.2
164,144 + -0.4
164,161 + -0.8
164,298 - -1.6
164,302 + -0.6
164,306 + 1.0
164,316 + -0.7
164,456 - 9365 mRNA_997 0.11 -1.3
164,606 - 9365 mRNA_997 0.15 0.9