Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_995

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_994: 9362 - K08513 VAMP4 vesicle-associated membrane protein 4, at 154065 to 154836 9362 mRNA_995: 9363 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 155513 to 160267 9363 mRNA_996: 9364 - K19791 FET3_5 iron transport multicopper oxidase, at 160516 to 163771 9364

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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154,594 - 9362 mRNA_994 0.69 0.4
154,735 - 9362 mRNA_994 0.87 0.1
154,886 + -0.3
154,888 - -0.4
154,900 + 0.0
155,039 + -0.6
155,041 + -0.8
155,069 - 0.1
155,069 + 0.3
155,186 - -0.5
155,207 - 0.3
155,209 + -0.5
155,212 - -1.2
155,217 + 0.4
155,221 + -1.2
155,225 + -1.1
155,260 + 0.1
155,469 - -0.4
156,199 + 9363 mRNA_995 0.14 -0.8
156,368 - 9363 mRNA_995 0.18 0.6
156,394 - 9363 mRNA_995 0.19 -2.0
156,632 + 9363 mRNA_995 0.24 -0.1
156,646 - 9363 mRNA_995 0.24 -0.5
157,213 - 9363 mRNA_995 0.36 -0.8
157,227 - 9363 mRNA_995 0.36 2.4
157,240 + 9363 mRNA_995 0.36 1.6
157,255 - 9363 mRNA_995 0.37 2.6
157,508 + 9363 mRNA_995 0.42 0.8
157,533 + 9363 mRNA_995 0.42 -0.5
157,660 - 9363 mRNA_995 0.45 -0.4
157,690 - 9363 mRNA_995 0.46 -1.1
157,793 - 9363 mRNA_995 0.48 -1.0
158,252 + 9363 mRNA_995 0.58 2.0
158,275 + 9363 mRNA_995 0.58 -1.0
158,828 - 9363 mRNA_995 0.70 1.9
159,305 - 9363 mRNA_995 0.80 -0.9
159,454 + 9363 mRNA_995 0.83 -0.9
159,742 - 9363 mRNA_995 0.89 -2.8
159,863 + 0.7
159,909 - 0.7
160,011 - -0.8
160,018 + 0.7
160,152 - 1.2
160,163 - -0.9
160,164 + 0.2
160,170 - 2.5
160,173 - -0.1
160,196 + -0.7
160,210 - -2.4
160,295 + -1.0
160,302 + -0.2
160,305 - 0.0
160,309 - -0.9
160,323 - -1.3
160,347 - 0.1
160,348 + -0.5
160,352 - -1.3
160,483 - 0.8