Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_994

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_993: 9361 - HMMPfam-Zinc finger, C2H2 type-PF00096,HMMPfam-C2H2-type zinc finger-PF13894,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SMART-zinc finger-SM00355,SUPERFAMILY--SSF57667, at 151634 to 153360 9361 mRNA_994: 9362 - K08513 VAMP4 vesicle-associated membrane protein 4, at 154065 to 154836 9362 mRNA_995: 9363 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 155513 to 160267 9363

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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153,130 - 9361 mRNA_993 0.87 0.9
153,135 - 9361 mRNA_993 0.87 0.8
153,155 - 9361 mRNA_993 0.88 -2.1
153,232 - 2.2
153,251 + 1.2
153,277 - 0.4
153,285 - -0.3
153,286 + 0.2
153,305 - -0.0
153,309 + 0.4
153,341 + 0.0
153,435 - -0.4
153,442 + -0.2
153,454 + -0.8
153,467 - -0.1
153,470 + -1.3
153,482 + -0.7
153,488 - 0.5
153,489 - -0.3
153,490 - 1.9
153,490 - 1.0
153,528 + -0.6
153,546 - -0.6
153,578 + -1.0
153,598 - -0.7
153,685 + 0.6
153,750 - 0.5
153,877 + 0.3
153,998 + 0.1
154,033 + 0.6
154,080 - 1.8
154,093 + 0.3
154,180 - 9362 mRNA_994 0.15 1.2
154,594 - 9362 mRNA_994 0.69 0.4
154,735 - 9362 mRNA_994 0.87 0.1
154,886 + -0.3
154,888 - -0.4
154,900 + 0.0
155,039 + -0.6
155,041 + -0.8
155,069 - 0.1
155,069 + 0.3
155,186 - -0.5
155,207 - 0.3
155,209 + -0.5
155,212 - -1.2
155,217 + 0.4
155,221 + -1.2
155,225 + -1.1
155,260 + 0.1
155,469 - -0.4