Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_890

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_889: 9257 - HMMPfam-Ribonuclease III domain-PF00636,ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SMART-Ribonuclease III family-SM00535,SUPERFAMILY--SSF69065, at 2126028 to 2126699 9257 mRNA_890: 9258 - HMMPfam-Double-stranded RNA binding motif-PF00035,HMMPfam-Ribonuclease-III-like-PF14622,ProSiteProfiles-Double stranded RNA-binding domain (dsRBD) profile.-PS50137,ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SMART-Double-stranded RNA binding motif-SM00358,SMART-Ribonuclease III family-SM00535,SUPERFAMILY--SSF54768,SUPERFAMILY--SSF69065, at 2126820 to 2127805 9258 mRNA_891: 9259 - K01405 PRD1 saccharolysin, at 2128133 to 2130693 9259

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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2,126,379 + 9257 mRNA_889 0.52 -0.4
2,126,381 + 9257 mRNA_889 0.53 1.2
2,126,541 + 9257 mRNA_889 0.76 0.1
2,126,624 - 9257 mRNA_889 0.89 -0.3
2,126,969 - 9258 mRNA_890 0.15 -1.1
2,127,115 - 9258 mRNA_890 0.30 -0.0
2,127,383 + 9258 mRNA_890 0.57 -0.0
2,127,428 + 9258 mRNA_890 0.62 -0.3
2,127,555 - 9258 mRNA_890 0.75 -0.8
2,127,740 + 0.9
2,127,771 - -1.1
2,127,899 + -0.9
2,128,280 + 1.3
2,128,317 + -1.2
2,128,403 - 9259 mRNA_891 0.11 0.5
2,128,602 - 9259 mRNA_891 0.18 0.7