Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_886

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_885: 9253 - K10590 TRIP12 E3 ubiquitin-protein ligase TRIP12, at 2111584 to 2117077 9253 mRNA_886: 9254 - KOG2504 Monocarboxylate transporter, at 2117590 to 2119437 9254

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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2,116,759 + 0.7
2,116,967 + 0.7
2,117,071 + -0.1
2,117,094 + -0.7
2,117,285 + -0.0
2,117,312 - 1.2
2,117,328 + -0.1
2,117,362 + -0.3
2,117,377 + 0.4
2,117,387 + -0.6
2,117,387 + 0.5
2,117,391 - -2.3
2,117,395 + -1.0
2,117,396 + 1.1
2,117,409 - 0.8
2,117,415 + -0.5
2,117,509 - -0.0
2,117,549 - -0.3
2,117,586 + 2.2
2,117,592 - -0.2
2,117,594 - 1.3
2,117,608 + -0.8
2,117,609 + 0.6
2,117,691 + -2.1
2,117,708 + -0.2
2,117,716 + -0.1
2,117,830 + 9254 mRNA_886 0.13 -0.2
2,117,908 - 9254 mRNA_886 0.17 0.1
2,117,917 + 9254 mRNA_886 0.18 1.9
2,118,589 + 9254 mRNA_886 0.54 0.5
2,118,975 - 9254 mRNA_886 0.75 0.3
2,119,261 - -0.6
2,119,303 - 0.4
2,119,424 - 0.5
2,119,447 - 1.2
2,119,470 - -0.3
2,119,560 + -0.5
2,119,732 + 0.5
2,119,812 - 0.9
2,119,821 - -0.1
2,119,838 - -1.0
2,119,847 + -1.7
2,119,899 + 0.8
2,119,899 + -0.9
2,119,904 - 1.3
2,119,904 - -1.0
2,119,907 - 0.8
2,119,916 + -1.3
2,119,916 + 0.0
2,119,917 - 2.2
2,119,930 - 1.0
2,119,937 - -2.7
2,120,033 + 0.1
2,120,038 + 0.8
2,120,040 + -0.7
2,120,046 + -0.3
2,120,056 + -0.1
2,120,058 + -0.7
2,120,066 + 1.0
2,120,088 + -0.1
2,120,188 - -0.5
2,120,199 + 0.5
2,120,200 - -0.7
2,120,202 - -0.1
2,120,207 - 0.3
2,120,223 - -0.0
2,120,230 - 0.1
2,120,351 + 0.7
2,120,356 - 0.9
2,120,387 - 1.0
2,120,407 + -0.1