Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_850

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_850: 9218 - SUPERFAMILY--SSF52047, at 2036866 to 2038448 9218 mRNA_851: 9219 - HMMPfam-Lipase (class 3)-PF01764,SUPERFAMILY--SSF53474, at 2039418 to 2042658 9219

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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2,035,916 + 2.4
2,035,936 + -0.2
2,035,936 + -0.1
2,035,958 - -1.9
2,035,964 + -1.0
2,036,055 - -0.4
2,036,066 - 1.2
2,036,067 + 0.3
2,036,067 - -0.9
2,036,075 + 1.5
2,036,085 - -0.3
2,036,111 + 0.0
2,036,121 + -1.5
2,036,130 - -0.6
2,036,143 + -1.0
2,036,149 - -2.0
2,036,203 + -0.2
2,036,225 + -0.2
2,036,235 - 1.0
2,036,267 + 0.0
2,036,403 - 0.1
2,036,546 + 1.2
2,036,558 - 0.8
2,036,561 + -1.3
2,036,696 - -0.2
2,036,698 - -0.7
2,036,707 - -0.4
2,036,711 + 0.0
2,036,712 + 1.1
2,036,734 - 0.6
2,036,735 - -0.2
2,036,741 - 1.0
2,036,743 + -1.3
2,036,800 - -0.4
2,036,801 - 0.4
2,036,808 + -0.2
2,036,809 + 0.3
2,036,810 + 0.1
2,036,824 - 1.1
2,036,825 + -0.6
2,036,827 + 0.1
2,036,827 + 1.6
2,036,827 + -0.6
2,036,830 + -0.9
2,036,830 + -1.0
2,036,843 - -0.1
2,036,846 + -0.5
2,036,848 + 1.7
2,036,852 + -2.0
2,036,861 - 0.3
2,036,952 - -1.6
2,036,953 + 1.6
2,036,988 - -0.6
2,037,292 - 9218 mRNA_850 0.27 0.8
2,037,292 - 9218 mRNA_850 0.27 -0.6
2,037,303 + 9218 mRNA_850 0.28 0.2
2,038,145 - 9218 mRNA_850 0.81 1.3
2,038,152 - 9218 mRNA_850 0.81 0.5
2,038,474 - -1.5
2,038,575 - 0.1
2,038,713 - 0.6
2,038,769 - -1.4
2,038,892 + -0.6
2,039,048 - -0.2
2,039,198 - -0.4