Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_832

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_831: 9199 - K12366 ELMO1, CED12 engulfment and cell motility protein 1, at 1990939 to 1993710 9199 mRNA_832: 9200 - K08835 OXSR1, STK39 serine/threonine-protein kinase OSR1/STK39, at 1993730 to 1995894 9200 mRNA_833: 9201 - HMMPfam-Homeobox domain-PF00046,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SMART-Homeodomain-SM00389,SUPERFAMILY--SSF46689, at 1996035 to 1997724 9201

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,993,202 + 9199 mRNA_831 0.82 0.2
1,993,208 + 9199 mRNA_831 0.82 0.7
1,993,519 + -0.1
1,993,529 - -1.5
1,993,642 - 1.4
1,993,788 + 0.9
1,993,952 - 9200 mRNA_832 0.10 -0.5
1,993,956 + 9200 mRNA_832 0.10 -0.5
1,993,959 + 9200 mRNA_832 0.11 -2.5
1,994,069 - 9200 mRNA_832 0.16 2.0
1,994,231 + 9200 mRNA_832 0.23 0.2
1,994,534 + 9200 mRNA_832 0.37 1.2
1,994,536 - 9200 mRNA_832 0.37 -0.1
1,994,677 - 9200 mRNA_832 0.44 0.4
1,994,677 - 9200 mRNA_832 0.44 0.2
1,994,715 - 9200 mRNA_832 0.45 -1.9
1,994,973 - 9200 mRNA_832 0.57 0.3
1,995,113 - 9200 mRNA_832 0.64 -0.7
1,995,274 - 9200 mRNA_832 0.71 -0.6
1,995,422 + 9200 mRNA_832 0.78 -1.2
1,995,692 + 0.0
1,996,023 + 0.5
1,996,183 - -0.5
1,996,204 + 9201 mRNA_833 0.10 0.6
1,996,324 - 9201 mRNA_833 0.17 -2.4
1,996,416 - 9201 mRNA_833 0.23 0.6
1,996,649 + 9201 mRNA_833 0.36 0.6