Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_822

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_821: 9189 - K14301 NUP107, NUP84 nuclear pore complex protein Nup107, at 1961565 to 1964829 9189 mRNA_822: 9190 - HMMPfam-Sec7 domain-PF01369,HMMPfam-Pleckstrin homology domain-PF15410,ProSiteProfiles-PH domain profile.-PS50003,ProSiteProfiles-SEC7 domain profile.-PS50190,SMART-Sec7 domain-SM00222,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF48425,SUPERFAMILY--SSF50729, at 1965379 to 1971450 9190 mRNA_823: 9191 - HMMPfam-Fungal domain of unknown function (DUF1712)-PF08217, at 1971584 to 1974293 9191

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,964,793 + 1.8
1,964,896 - -0.5
1,964,904 + 0.8
1,964,910 - 0.4
1,964,910 - -0.1
1,964,922 + 0.9
1,964,932 + 1.1
1,964,936 + -0.4
1,964,936 + -0.3
1,965,043 - -0.0
1,965,075 - 1.3
1,965,402 + -1.0
1,965,520 + -0.8
1,965,724 - 0.2
1,965,760 - -1.4
1,965,813 - 0.7
1,965,817 + 0.1
1,965,818 - -0.5
1,966,348 + 9190 mRNA_822 0.16 -0.5
1,966,671 - 9190 mRNA_822 0.21 -0.6
1,966,684 - 9190 mRNA_822 0.21 0.5
1,966,685 + 9190 mRNA_822 0.22 -0.2
1,966,872 + 9190 mRNA_822 0.25 0.9
1,967,967 + 9190 mRNA_822 0.43 0.0
1,968,619 + 9190 mRNA_822 0.53 2.1
1,969,172 - 9190 mRNA_822 0.62 0.9
1,969,650 - 9190 mRNA_822 0.70 -0.0
1,970,059 - 9190 mRNA_822 0.77 -0.4
1,970,500 + 9190 mRNA_822 0.84 -0.6
1,970,946 - 1.3
1,971,236 - -2.7
1,971,385 + -0.4
1,971,535 - 3.1
1,971,795 - 0.2
1,971,829 + 0.5
1,971,829 + -1.3
1,971,834 + 0.3
1,972,246 + 9191 mRNA_823 0.24 0.9
1,972,428 + 9191 mRNA_823 0.31 1.5