Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_779

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_778: 9146 - K14548 UTP4, CIRH1A U3 small nucleolar RNA-associated protein 4, at 1850724 to 1853969 9146 mRNA_779: 9147 - Hypothetical Protein, at 1854108 to 1855117 9147 mRNA_780: 9148 - K15172 SUPT5H, SPT5 transcription elongation factor SPT5, at 1855751 to 1860182 9148

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,854,184 + 0.5
1,854,203 - 0.4
1,854,254 + 9147 mRNA_779 0.14 -0.2
1,854,287 - 9147 mRNA_779 0.18 1.3
1,854,712 + 9147 mRNA_779 0.60 0.9
1,854,804 - 9147 mRNA_779 0.69 -0.2
1,854,818 - 9147 mRNA_779 0.70 0.3
1,854,866 + 9147 mRNA_779 0.75 0.2
1,855,094 - 0.1
1,855,224 + -0.1
1,855,235 + -0.2
1,855,247 - 0.9
1,855,403 - -1.2
1,855,414 - 1.2
1,855,548 - 0.3
1,855,573 - 0.4
1,855,578 + 1.3
1,855,579 + -0.2
1,855,706 + -0.0
1,855,714 - -1.0
1,855,725 - 0.4