Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_736

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_735: 9103 - KOG0175 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2, at 1753965 to 1755090 9103 mRNA_736: 9104 - K00034 gdh glucose 1-dehydrogenase, at 1755244 to 1756596 9104 mRNA_737: 9105 - HMMPfam-EthD domain-PF07110,SUPERFAMILY--SSF54909,TIGRFAM-TIGR02118 conserved hypothetical protein-TIGR02118, at 1756906 to 1757418 9105

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,754,311 + 9103 mRNA_735 0.31 -1.2
1,754,450 + 9103 mRNA_735 0.43 -1.3
1,754,489 + 9103 mRNA_735 0.47 -0.8
1,754,587 - 9103 mRNA_735 0.55 -1.8
1,754,720 - 9103 mRNA_735 0.67 1.7
1,754,751 - 9103 mRNA_735 0.70 -0.1
1,754,831 - 9103 mRNA_735 0.77 -0.9
1,755,560 - 9104 mRNA_736 0.23 0.6
1,755,592 - 9104 mRNA_736 0.26 -1.1
1,755,984 - 9104 mRNA_736 0.55 0.0
1,756,316 - 9104 mRNA_736 0.79 -0.4
1,756,409 + 9104 mRNA_736 0.86 -0.9
1,756,755 - -0.1
1,756,803 + -0.3
1,756,809 - 1.1
1,756,821 + 1.3
1,756,824 - 0.6
1,756,853 + 0.2
1,757,372 - 0.0
1,757,377 + 1.1
1,757,378 + -0.9
1,757,521 + 0.1