Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_585

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_584: 8952 - K01259 pip proline iminopeptidase, at 1394806 to 1396431 8952 mRNA_585: 8953 - HMMPfam-Polynucleotide kinase 3 phosphatase-PF08645,HMMPfam-AAA domain-PF13671,SUPERFAMILY--SSF52540,SUPERFAMILY--SSF56784, at 1396746 to 1398490 8953 mRNA_586: 8954 - K20291 COG4, COD1 conserved oligomeric Golgi complex subunit 4, at 1398655 to 1401525 8954

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,395,872 + 8952 mRNA_584 0.66 -0.3
1,396,112 - 8952 mRNA_584 0.80 -0.3
1,396,135 + 8952 mRNA_584 0.82 0.0
1,396,294 - -0.3
1,396,313 + -1.0
1,396,417 + -0.1
1,396,429 - -2.0
1,396,430 + -0.1
1,396,436 + -2.7
1,396,440 + 0.5
1,396,739 - 1.9
1,396,754 - 0.3
1,397,025 - 8953 mRNA_585 0.16 -1.2
1,397,048 + 8953 mRNA_585 0.17 1.1
1,397,318 + 8953 mRNA_585 0.33 2.0
1,397,341 - 8953 mRNA_585 0.34 -0.0
1,397,474 - 8953 mRNA_585 0.42 -0.7
1,397,506 - 8953 mRNA_585 0.44 -1.7
1,397,776 - 8953 mRNA_585 0.59 -0.5
1,397,919 + 8953 mRNA_585 0.67 -0.4
1,398,692 - 3.9