Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_545

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_544: 8912 - K00902 E2.7.1.108 dolichol kinase, at 1291246 to 1294493 8912 mRNA_545: 8913 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 1295068 to 1298428 8913 mRNA_546: 8914 - K00799 GST, gst glutathione S-transferase, at 1298658 to 1299726 8914

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,294,212 + -2.1
1,294,487 + -1.2
1,294,498 - -0.4
1,294,627 + -0.6
1,294,636 - 1.0
1,294,639 - 1.7
1,294,664 - 0.0
1,294,668 + 2.1
1,294,672 + -1.3
1,294,780 - 4.0
1,294,794 - -2.1
1,294,796 - -0.4
1,294,804 - 0.1
1,295,103 - -0.2
1,295,244 - -0.5
1,295,245 + -1.4
1,295,390 - -1.0
1,295,407 + 8913 mRNA_545 0.10 -0.8
1,295,815 - 8913 mRNA_545 0.22 0.6
1,295,960 - 8913 mRNA_545 0.27 1.4
1,296,000 - 8913 mRNA_545 0.28 -0.9
1,296,123 + 8913 mRNA_545 0.31 2.0
1,296,515 + 8913 mRNA_545 0.43 1.1
1,296,676 - 8913 mRNA_545 0.48 0.8
1,296,694 + 8913 mRNA_545 0.48 -1.3
1,296,713 + 8913 mRNA_545 0.49 -1.9
1,296,969 - 8913 mRNA_545 0.57 -0.5
1,297,163 + 8913 mRNA_545 0.62 0.3
1,297,427 - 8913 mRNA_545 0.70 -0.0
1,298,089 + 8913 mRNA_545 0.90 -0.9
1,298,222 + -0.1
1,298,373 - -1.4
1,298,562 - 0.5
1,299,004 - 8914 mRNA_546 0.32 1.1
1,299,005 + 8914 mRNA_546 0.32 0.6
1,299,125 + 8914 mRNA_546 0.44 -0.8
1,299,132 - 8914 mRNA_546 0.44 0.8