Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_402

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_401: 8769 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 934317 to 936010 8769 mRNA_402: 8770 - BLAST N-terminal acetyltransferase catalytic subunit Nat1 [..., at 936053 to 937253 8770 mRNA_403: 8771 - Hypothetical Protein, at 937327 to 938664 8771

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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935,384 + 8769 mRNA_401 0.63 1.2
935,386 - 8769 mRNA_401 0.63 0.7
935,797 - 8769 mRNA_401 0.87 0.1
935,835 + 8769 mRNA_401 0.90 0.1
935,932 + -0.0
935,956 - -4.4
935,995 - -1.3
936,009 - -0.4
936,011 + 0.2
936,017 - -0.9
936,018 + -1.1
936,047 + -0.9
936,055 + 0.7
936,083 - 1.4
936,084 + 0.1
936,091 - -0.5
936,091 - 0.9
936,092 + 0.4
936,101 + -0.6
936,103 - 0.4
936,106 - -0.5
936,111 + -1.0
936,122 - -0.5
936,123 - -1.0
936,130 - 1.2
936,134 - 0.1
936,135 - -1.0
936,138 + -1.2
936,138 + -1.3
936,152 - 0.8
936,195 + 8770 mRNA_402 0.12 -0.4
936,206 + 8770 mRNA_402 0.13 -0.1
936,209 - 8770 mRNA_402 0.13 0.1
936,211 + 8770 mRNA_402 0.13 0.6
936,213 + 8770 mRNA_402 0.13 0.1
936,235 + 8770 mRNA_402 0.15 0.7
936,242 - 8770 mRNA_402 0.16 1.5
936,254 - 8770 mRNA_402 0.17 -1.3
936,254 - 8770 mRNA_402 0.17 0.4
936,259 - 8770 mRNA_402 0.17 -0.4
936,277 - 8770 mRNA_402 0.19 -0.3
936,293 - 8770 mRNA_402 0.20 -1.0
936,309 - 8770 mRNA_402 0.21 0.5
936,310 + 8770 mRNA_402 0.21 0.5
936,311 + 8770 mRNA_402 0.21 -0.9
936,312 - 8770 mRNA_402 0.22 0.1
936,320 + 8770 mRNA_402 0.22 -0.4
936,325 - 8770 mRNA_402 0.23 -0.4
936,330 - 8770 mRNA_402 0.23 0.8
936,331 - 8770 mRNA_402 0.23 -0.8
936,332 - 8770 mRNA_402 0.23 -2.2
936,343 - 8770 mRNA_402 0.24 0.3
936,349 - 8770 mRNA_402 0.25 -1.3
936,368 + 8770 mRNA_402 0.26 -0.1
936,380 - 8770 mRNA_402 0.27 0.2
936,381 - 8770 mRNA_402 0.27 -0.9
936,381 - 8770 mRNA_402 0.27 -1.1
936,384 + 8770 mRNA_402 0.28 -1.5
936,385 + 8770 mRNA_402 0.28 0.2
936,396 + 8770 mRNA_402 0.29 1.3
936,396 - 8770 mRNA_402 0.29 -0.1
936,429 - 8770 mRNA_402 0.31 -2.1
936,477 - 8770 mRNA_402 0.35 -0.6
936,512 + 8770 mRNA_402 0.38 0.2
936,539 + 8770 mRNA_402 0.40 -0.6
936,542 + 8770 mRNA_402 0.41 0.8
936,545 + 8770 mRNA_402 0.41 -2.4
936,550 + 8770 mRNA_402 0.41 0.4
936,567 - 8770 mRNA_402 0.43 0.1
936,578 + 8770 mRNA_402 0.44 -0.7
936,615 + 8770 mRNA_402 0.47 -2.1
936,633 + 8770 mRNA_402 0.48 -0.7
936,645 - 8770 mRNA_402 0.49 -2.0
936,649 - 8770 mRNA_402 0.50 -1.2
936,652 - 8770 mRNA_402 0.50 -1.6
936,664 + 8770 mRNA_402 0.51 -0.4
936,664 + 8770 mRNA_402 0.51 -0.5
936,669 + 8770 mRNA_402 0.51 -0.7
936,683 - 8770 mRNA_402 0.52 -1.2
936,683 - 8770 mRNA_402 0.52 -2.0
936,703 - 8770 mRNA_402 0.54 -0.2
936,712 - 8770 mRNA_402 0.55 -0.8
936,743 - 8770 mRNA_402 0.57 0.3
936,750 - 8770 mRNA_402 0.58 1.4
936,750 - 8770 mRNA_402 0.58 -0.5
936,772 + 8770 mRNA_402 0.60 0.2
936,774 - 8770 mRNA_402 0.60 0.2
936,775 + 8770 mRNA_402 0.60 -1.1
936,781 + 8770 mRNA_402 0.61 -1.6
936,790 + 8770 mRNA_402 0.61 0.3
936,791 - 8770 mRNA_402 0.61 2.3
936,793 - 8770 mRNA_402 0.62 -2.8
936,801 - 8770 mRNA_402 0.62 0.1
936,809 - 8770 mRNA_402 0.63 1.7
936,813 - 8770 mRNA_402 0.63 -1.1
936,817 - 8770 mRNA_402 0.64 -0.5
936,827 - 8770 mRNA_402 0.64 -0.5
936,829 + 8770 mRNA_402 0.65 -0.8
936,830 - 8770 mRNA_402 0.65 0.5
936,832 - 8770 mRNA_402 0.65 -0.2
936,837 + 8770 mRNA_402 0.65 0.3
936,887 - 8770 mRNA_402 0.69 -1.1
937,262 - -1.4
937,277 - -1.1
937,279 - -0.9
937,281 - -2.4
937,285 - 0.3
937,289 + 0.0
937,292 - -1.2
937,306 + 1.6
937,310 + -0.1
937,311 - 0.1
937,385 - -1.4
937,394 - 0.4
937,400 + -0.8
937,405 - 2.0
937,406 + -0.5
937,409 + -3.1
937,409 + 2.2
937,411 + 0.1
937,411 + 1.0
937,412 + 0.2
937,414 - 2.0
937,417 - -1.6
937,419 + 0.4
937,422 - -1.4
937,424 + 0.0
937,429 - 0.4
937,433 + -2.7
937,434 - -1.0
937,537 - 8771 mRNA_403 0.16 -0.4
937,541 - 8771 mRNA_403 0.16 -0.1
937,553 + 8771 mRNA_403 0.17 -0.3
937,562 + 8771 mRNA_403 0.18 1.5
937,567 - 8771 mRNA_403 0.18 -0.4
937,580 + 8771 mRNA_403 0.19 1.0
937,588 + 8771 mRNA_403 0.20 0.3
937,607 - 8771 mRNA_403 0.21 -1.0
937,635 - 8771 mRNA_403 0.23 -0.4
937,646 + 8771 mRNA_403 0.24 -1.6
937,712 + 8771 mRNA_403 0.29 1.3
937,712 + 8771 mRNA_403 0.29 -0.4
937,726 - 8771 mRNA_403 0.30 -0.5
937,750 + 8771 mRNA_403 0.32 -0.1
937,751 + 8771 mRNA_403 0.32 -1.5
937,775 - 8771 mRNA_403 0.33 0.5
937,813 - 8771 mRNA_403 0.36 0.4
937,830 + 8771 mRNA_403 0.38 -0.6
937,871 - 8771 mRNA_403 0.41 -0.4
937,931 + 8771 mRNA_403 0.45 -0.1
938,092 + 8771 mRNA_403 0.57 -0.5
938,188 - 8771 mRNA_403 0.64 -0.4