Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_300

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_299: 8667 - ProSiteProfiles-SET domain profile.-PS50280,SUPERFAMILY--SSF82199, at 707483 to 708587 8667 mRNA_300: 8668 - BLAST transcription factor hoxa13 [Aspergillus bombycis], at 709223 to 712870 8668

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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708,303 + 8667 mRNA_299 0.74 0.5
708,490 - 0.1
708,731 - 1.0
708,734 - -0.1
708,734 + 0.4
709,004 + 1.1
709,028 + 0.3
709,138 - 0.5
709,159 - -0.5
709,180 + -1.8
709,188 - 0.9
709,215 + -0.4
709,243 - -0.9
709,317 - 0.4
709,342 + -1.5
709,443 - -0.4
709,474 - -0.1
709,502 + -1.6
709,626 - 8668 mRNA_300 0.11 -0.3
709,631 - 8668 mRNA_300 0.11 0.0
709,916 - 8668 mRNA_300 0.19 0.1
709,945 + 8668 mRNA_300 0.20 -0.5
710,214 - 8668 mRNA_300 0.27 -0.2
710,501 + 8668 mRNA_300 0.35 -1.6
710,932 - 8668 mRNA_300 0.47 0.8
710,970 - 8668 mRNA_300 0.48 0.2
711,209 + 8668 mRNA_300 0.54 -0.5
711,592 - 8668 mRNA_300 0.65 1.8
711,658 - 8668 mRNA_300 0.67 0.4
712,422 + 8668 mRNA_300 0.88 -0.6
712,561 - -3.6
713,004 - 2.7
713,107 - -0.3
713,250 - -0.2
713,278 + 1.4
713,283 + -0.0
713,404 + -0.4
713,417 - -0.4
713,418 - -0.7
713,422 + 0.0
713,423 - -1.1
713,443 + 0.6
713,443 + -1.1
713,447 + -0.0
713,477 - 0.0
713,483 - -0.4
713,490 + -0.4
713,529 + 0.4
713,533 + 1.0
713,537 - -0.9
713,544 - -1.7
713,545 - 0.3
713,547 + 1.9
713,550 + 0.1
713,556 - 0.3
713,563 + 1.0
713,566 - 2.4
713,576 - 2.4
713,581 + -1.0
713,698 - -0.3
713,715 + 0.1
713,716 + -0.2
713,720 - -1.9
713,868 + -0.2