Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_299

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_298: 8666 - KOG0725 Reductases with broad range of substrate specificities, at 705560 to 707244 8666 mRNA_299: 8667 - ProSiteProfiles-SET domain profile.-PS50280,SUPERFAMILY--SSF82199, at 707483 to 708587 8667 mRNA_300: 8668 - BLAST transcription factor hoxa13 [Aspergillus bombycis], at 709223 to 712870 8668

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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706,485 + 8666 mRNA_298 0.55 -0.6
706,614 - 8666 mRNA_298 0.63 -0.1
706,917 - 8666 mRNA_298 0.81 0.3
707,073 - 8666 mRNA_298 0.90 -2.4
707,093 + 0.1
707,187 + 0.7
707,204 - -0.6
707,334 - -1.6
707,336 - -2.2
707,350 - 1.1
707,364 - -1.1
707,389 + 0.8
707,417 - 0.3
707,426 + -0.2
707,427 - -0.9
707,427 - -1.6
707,538 - -0.9
707,581 + 1.2
707,690 - 8667 mRNA_299 0.19 -2.7
707,691 - 8667 mRNA_299 0.19 -0.3
707,695 + 8667 mRNA_299 0.19 -0.2
707,696 + 8667 mRNA_299 0.19 0.3
707,833 - 8667 mRNA_299 0.32 1.2
707,838 + 8667 mRNA_299 0.32 2.6
707,866 + 8667 mRNA_299 0.35 1.3
708,024 + 8667 mRNA_299 0.49 0.4
708,025 + 8667 mRNA_299 0.49 -1.9
708,158 - 8667 mRNA_299 0.61 0.4
708,303 + 8667 mRNA_299 0.74 0.5
708,490 - 0.1
708,731 - 1.0
708,734 - -0.1
708,734 + 0.4
709,004 + 1.1
709,028 + 0.3
709,138 - 0.5
709,159 - -0.5
709,180 + -1.8
709,188 - 0.9
709,215 + -0.4
709,243 - -0.9
709,317 - 0.4
709,342 + -1.5
709,443 - -0.4
709,474 - -0.1
709,502 + -1.6