Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_194

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_194: 8562 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 473851 to 475704 8562 mRNA_195: 8563 - K14570 REX1, REXO1, RNH70 RNA exonuclease 1, at 475882 to 478455 8563

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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472,879 + 0.3
472,892 - -2.2
472,894 + 1.5
473,064 - -0.4
473,084 - 0.4
473,085 - 0.1
473,093 + 0.6
473,102 + -2.7
473,102 - -1.0
473,111 - 0.0
473,115 + -0.5
473,154 - 0.8
473,169 + 0.5
473,169 - -0.2
473,176 + -0.4
473,188 + 0.2
473,188 - 0.3
473,193 + 0.1
473,199 + -1.2
473,210 - 0.2
473,211 + 1.4
473,224 + 0.9
473,228 + -2.6
473,230 - 0.4
473,231 - 0.1
473,239 - 2.3
473,243 + 0.6
473,244 + -2.2
473,247 + -0.3
473,250 + 0.1
473,269 + -0.0
473,280 + -0.2
473,283 - -0.5
473,297 - -0.1
473,302 + -0.3
473,323 - -0.2
473,351 - 0.0
473,358 - -0.0
473,365 - -1.9
473,368 + -0.8
473,393 - 0.3
473,394 + -1.0
473,403 + 2.5
473,406 - 1.5
473,414 + -1.5
473,425 + 1.0
473,466 + -0.2
473,474 - -0.5
473,479 + -1.6
473,482 - 0.6
473,489 - 0.2
473,503 - -0.1
473,509 + 0.9
473,510 - -1.6
473,523 - 0.3
473,545 - -0.7
473,578 - 0.0
473,610 - 0.1
473,611 + -0.6
473,658 + 0.5
473,671 + -0.7
473,695 - -1.0
473,718 - 2.3
473,770 - 0.4
473,790 - 1.2
473,796 - 0.3
473,972 + 1.2
473,981 + -0.8
474,194 + 8562 mRNA_194 0.19 -0.4
474,215 - 8562 mRNA_194 0.20 -0.5
474,254 + 8562 mRNA_194 0.22 -1.2
474,664 + 8562 mRNA_194 0.44 -0.2
474,674 + 8562 mRNA_194 0.44 -0.4
474,961 - 8562 mRNA_194 0.60 0.8
475,410 - 8562 mRNA_194 0.84 -1.7
475,696 - -1.0
475,722 - -0.2
475,755 + 0.8