Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_180

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_179: 8547 - KOG2886 Uncharacterized conserved protein, at 437893 to 438740 8547 mRNA_180: 8548 - K01647 CS, gltA citrate synthase, at 438943 to 441127 8548 mRNA_181: 8549 - K12870 ISY1 pre-mRNA-splicing factor ISY1, at 441723 to 442875 8549

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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437,946 - -0.6
437,994 - 8547 mRNA_179 0.12 -1.6
437,995 + 8547 mRNA_179 0.12 0.9
438,286 + 8547 mRNA_179 0.46 1.2
438,294 - 8547 mRNA_179 0.47 0.3
438,468 - 8547 mRNA_179 0.68 1.4
438,697 + 0.9
438,710 - -0.4
438,711 + 1.3
438,717 - 0.2
438,727 - 0.3
438,734 + 1.1
438,736 - 0.2
438,741 - 0.9
438,751 - 0.0
438,766 - -1.3
438,768 - -1.7
438,862 - -1.3
438,864 - 1.0
438,866 - 2.5
438,890 - -0.1
438,998 + -0.1
439,019 - -1.4
439,019 - 1.1
439,024 - -1.2
439,030 - -2.0
439,048 - -0.9
439,050 + -0.8
439,186 - 8548 mRNA_180 0.11 0.1
439,206 + 8548 mRNA_180 0.12 0.8
439,230 + 8548 mRNA_180 0.13 0.8
439,250 + 8548 mRNA_180 0.14 -0.6
439,332 + 8548 mRNA_180 0.18 -0.8
439,336 + 8548 mRNA_180 0.18 -0.5
439,503 + 8548 mRNA_180 0.26 -1.1
439,598 + 8548 mRNA_180 0.30 -0.1
439,642 - 8548 mRNA_180 0.32 -0.3
439,652 - 8548 mRNA_180 0.32 0.8
439,778 - 8548 mRNA_180 0.38 -0.8
439,779 + 8548 mRNA_180 0.38 0.9
439,887 - 8548 mRNA_180 0.43 -1.4
440,229 - 8548 mRNA_180 0.59 0.1
440,682 - 8548 mRNA_180 0.80 0.0
440,965 + -0.1
441,072 - 0.3
441,246 - -1.7
441,283 - -1.0
441,611 - -0.6