Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_151

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_150: 8518 - HMMPfam-Beta-glucan synthesis-associated protein (SKN1)-PF03935,SUPERFAMILY--SSF49899, at 375753 to 378108 8518 mRNA_151: 8519 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 379065 to 379994 8519 mRNA_152: 8520 - BLAST Midasin [Pteropus alecto], at 380241 to 381290 8520

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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378,076 - 1.4
378,289 - -1.6
378,324 - -0.6
378,327 + 1.1
378,428 + 0.6
378,443 - -0.9
378,465 + 0.0
378,468 - -0.5
378,500 + -0.4
378,610 - 0.3
378,611 - 0.4
378,613 - 1.7
378,614 + -0.0
378,614 - -0.7
378,616 + 0.2
378,618 + -1.2
378,619 - 0.3
378,624 + -0.9
378,629 - -0.2
378,639 - 0.7
378,658 + -2.1
378,663 - -0.3
378,759 - 0.2
378,763 + 0.3
378,769 + 0.3
378,794 - 0.1
378,797 - 0.6
378,797 - 0.4
378,799 - -0.3
378,800 + 1.3
378,804 + 0.9
378,808 + -0.4
378,812 + 0.3
378,813 - -0.2
378,825 + 1.2
378,827 - -2.3
378,829 - -2.4
378,831 - -0.6
378,875 + 0.1
378,954 - -0.5
378,957 - -0.6
378,959 - -3.1
378,994 + 0.0
378,995 - -1.4
379,116 - -2.1
379,136 + 0.6
379,136 + 0.9
379,139 - -0.4
379,145 - 0.1
379,156 - 1.5
379,268 - 8519 mRNA_151 0.22 1.2
379,365 - 8519 mRNA_151 0.32 -1.3
379,553 - 8519 mRNA_151 0.52 -1.1
379,586 + 8519 mRNA_151 0.56 -0.7
379,596 - 8519 mRNA_151 0.57 0.8
379,687 + 8519 mRNA_151 0.67 -0.4
379,998 + -0.0
380,264 + -2.2
380,274 + -0.1
380,418 - 8520 mRNA_152 0.17 0.6
380,443 - 8520 mRNA_152 0.19 1.0
380,443 + 8520 mRNA_152 0.19 -0.1
380,580 + 8520 mRNA_152 0.32 0.1
380,719 + 8520 mRNA_152 0.46 -0.2
380,728 - 8520 mRNA_152 0.46 -0.0
380,732 - 8520 mRNA_152 0.47 -0.5
380,735 + 8520 mRNA_152 0.47 -2.1
380,736 + 8520 mRNA_152 0.47 1.2
380,756 + 8520 mRNA_152 0.49 1.7
380,760 - 8520 mRNA_152 0.49 -0.1
380,861 + 8520 mRNA_152 0.59 0.1
380,878 + 8520 mRNA_152 0.61 -0.2
380,879 + 8520 mRNA_152 0.61 0.7
380,885 - 8520 mRNA_152 0.61 0.7
380,885 - 8520 mRNA_152 0.61 -2.2
380,887 - 8520 mRNA_152 0.62 1.3
380,887 - 8520 mRNA_152 0.62 0.1
380,889 - 8520 mRNA_152 0.62 -0.1
380,893 - 8520 mRNA_152 0.62 0.8
380,903 - 8520 mRNA_152 0.63 0.9
380,904 + 8520 mRNA_152 0.63 -1.9
380,904 + 8520 mRNA_152 0.63 -1.2
380,908 - 8520 mRNA_152 0.64 0.8
380,908 + 8520 mRNA_152 0.64 -0.3
380,911 - 8520 mRNA_152 0.64 -0.5
380,912 + 8520 mRNA_152 0.64 0.1
380,918 - 8520 mRNA_152 0.64 -0.2
380,925 - 8520 mRNA_152 0.65 -1.1
380,926 + 8520 mRNA_152 0.65 0.3
380,952 + 8520 mRNA_152 0.68 0.0
380,994 - 8520 mRNA_152 0.72 -0.7