Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_141

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_140: 8508 - K14571 RIX7, NVL ribosome biogenesis ATPase, at 336645 to 339470 8508 mRNA_141: 8509 - Hypothetical Protein, at 339978 to 342089 8509 mRNA_142: 8510 - HMMPfam-Protein of unknown function (DUF3712)-PF12505, at 343005 to 355699 8510

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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339,578 - 0.6
339,595 - -1.0
339,597 + -1.7
339,606 - 1.3
339,614 - 0.5
339,617 + 0.1
339,617 + -0.7
339,729 + 1.0
339,744 + -0.4
339,767 - -2.5
339,779 - 0.1
339,782 + 2.0
339,786 - -0.7
339,789 - -1.7
339,798 - -0.2
339,798 - -2.4
339,802 - 1.3
339,803 + -0.7
339,804 - 0.8
339,811 + 1.8
339,837 + -0.3
339,837 + 0.6
339,837 - -0.6
339,841 + -0.7
339,844 + 0.2
339,844 + -0.1
339,846 - -0.4
339,851 - -0.7
339,851 + 0.6
339,852 - -1.1
339,861 + -0.4
339,864 + 2.0
339,865 - 0.9
339,885 - 0.8
339,892 + -2.0
339,897 - 0.1
339,900 + -2.3
339,907 + -1.1
339,911 + 0.7
339,913 + -0.0
339,925 - 2.3
340,037 + 0.9
340,081 - 0.2
340,224 - 8509 mRNA_141 0.12 1.5
340,239 + 8509 mRNA_141 0.12 -0.8
341,286 + 8509 mRNA_141 0.62 -0.2
341,520 - 8509 mRNA_141 0.73 1.6
341,679 - 8509 mRNA_141 0.81 0.3
341,809 - 8509 mRNA_141 0.87 0.7
341,977 - 0.2
342,072 + 0.1
342,127 + 0.5
342,129 + 1.1
342,131 - 0.2
342,144 + -0.4
342,149 - -0.2
342,167 + 0.4
342,171 - -0.0
342,177 + 0.2
342,187 - 0.1
342,220 - -0.9
342,230 - 0.2
342,230 - -0.2
342,248 - -0.1
342,249 + -0.8
342,250 - -2.3
342,250 + -0.9
342,274 + -1.6
342,293 - 1.1
342,309 - 0.6
342,313 + 0.5
342,317 - 0.1
342,326 - -0.4
342,328 - 1.1
342,328 - -1.0
342,330 - -1.4
342,337 - -1.7
342,342 + 0.3
342,344 + -1.5
342,344 + -0.7
342,353 + -0.9
342,476 + 1.2
342,477 + 2.2
342,487 + 0.2
342,488 - 1.3
342,491 - -1.7
342,493 - -1.3
342,550 - 0.5
342,591 - -0.4
342,611 - 2.3
342,619 - 0.7
342,620 + -0.3
342,626 + 0.2
342,639 - -0.5
342,652 + -0.6
342,742 - -2.0
342,750 - -0.6
342,759 - 0.4
342,761 + -1.0
342,762 + -0.0
342,791 - -0.3
342,793 + 0.9
342,808 - 0.3
342,811 + -1.0
342,884 - -1.6
342,951 + -1.2
342,996 - -2.6