Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_70

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_69: 8437 - K03029 PSMD4, RPN10 26S proteasome regulatory subunit N10, at 163948 to 165826 8437 mRNA_70: 8438 - HMMPfam-Membrane-associating domain-PF01284, at 166029 to 167085 8438 mRNA_71: 8439 - HMMPfam-YABBY protein-PF04690,SUPERFAMILY--SSF47095, at 167576 to 168117 8439

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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165,182 - 8437 mRNA_69 0.66 -1.6
165,201 + 8437 mRNA_69 0.67 -0.5
165,467 + 8437 mRNA_69 0.81 0.4
165,660 - -1.6
165,771 + -1.5
165,799 + 1.0
165,801 - -1.1
165,832 + 1.3
165,875 - -0.0
165,879 - -0.6
165,882 + 1.5
165,888 - 0.2
165,897 - 1.0
165,899 - -0.7
165,912 - 1.5
165,912 + -0.1
165,926 - 0.5
165,940 + -2.4
165,940 + -0.4
165,942 - -1.2
165,951 - -0.9
165,952 - -0.8
165,952 + -2.2
165,953 + 0.3
165,966 - 0.2
165,967 + -0.4
166,098 + 0.0
166,099 - 2.1
166,103 + -0.8
166,113 - -1.7
166,117 + -0.2
166,117 + -1.1
166,126 + -0.9
166,255 + 8438 mRNA_70 0.21 2.9
166,263 - 8438 mRNA_70 0.22 0.7
166,400 + 8438 mRNA_70 0.35 0.8
166,406 - 8438 mRNA_70 0.36 -0.7
167,233 - -0.5
167,246 + 1.8
167,302 + 2.5
167,411 + -0.1
167,413 + 0.0