Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_19

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_18: 8386 - KOG1515 Arylacetamide deacetylase, at 50473 to 51921 8386 mRNA_19: 8387 - KOG1399 Flavin-containing monooxygenase, at 52301 to 54654 8387 mRNA_20: 8388 - KOG0519 Sensory transduction histidine kinase, at 55031 to 59299 8388

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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51,432 - 8386 mRNA_18 0.66 0.6
51,550 + 8386 mRNA_18 0.74 0.2
51,561 - 8386 mRNA_18 0.75 -1.2
51,562 + 8386 mRNA_18 0.75 0.3
51,654 + 8386 mRNA_18 0.82 -0.9
51,655 - 8386 mRNA_18 0.82 1.1
51,845 - 1.5
51,845 + -0.2
51,846 + -1.7
51,962 - 0.5
52,120 + -1.4
52,128 - 1.1
52,132 - -0.4
52,157 + -0.1
52,815 + 8387 mRNA_19 0.22 -2.4
52,819 - 8387 mRNA_19 0.22 1.2
52,852 - 8387 mRNA_19 0.23 0.4
52,876 - 8387 mRNA_19 0.24 0.4
52,889 - 8387 mRNA_19 0.25 -0.1
52,897 + 8387 mRNA_19 0.25 1.9
52,952 - 8387 mRNA_19 0.28 1.4
52,970 + 8387 mRNA_19 0.28 1.7
53,847 + 8387 mRNA_19 0.66 -1.1
53,892 - 8387 mRNA_19 0.68 -1.5
53,900 + 8387 mRNA_19 0.68 1.2
53,910 + 8387 mRNA_19 0.68 0.1
53,912 - 8387 mRNA_19 0.68 0.6
54,110 + 8387 mRNA_19 0.77 -0.3
54,165 - 8387 mRNA_19 0.79 0.2
54,210 + 8387 mRNA_19 0.81 3.4
54,466 + -1.0
54,566 + 0.2
54,569 - -1.6
54,595 - 0.9
54,602 - -0.5
54,605 + 1.2
54,629 + -1.2
54,751 - 0.2
54,754 - -0.2
54,754 - 0.1
54,758 - -0.7
54,760 + 0.9
54,761 + -1.2
54,765 - 1.1
54,767 + -1.7
54,768 - 0.4
54,776 - 1.4
54,777 + 1.5
54,777 + -1.9
54,782 + 0.9
54,787 + -0.2
54,913 - 2.3
54,917 - -0.3
54,947 + -1.5
54,947 + -0.0
54,952 - -0.3
55,100 + -0.8
55,379 - 0.9
55,383 + 0.1