Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1: 8369 - K12198 CHMP5, VPS60 charged multivesicular body protein 5, at 1571 to 2453 8369 mRNA_2: 8370 - PRINTS-Proline rich extensin signature-PR01217, at 3233 to 7809 8370

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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595 + -0.2
609 - 0.3
637 - 0.0
651 + -0.4
654 + 0.6
659 - 0.4
663 + -1.4
672 - 0.2
673 + 0.1
685 + 2.4
725 + -2.0
790 - 0.2
791 + 0.9
798 + 0.9
798 + -0.1
804 - 0.5
821 + -2.3
860 + -2.2
899 - -1.8
916 + 0.8
939 + 0.5
957 + -1.5
975 - 0.9
976 + 2.0
996 - -0.2
1,005 + 0.2
1,005 - -1.6
1,007 - -2.3
1,052 + 1.2
1,058 + 0.1
1,070 + 1.2
1,113 - -0.1
1,115 - -0.1
1,117 + -0.4
1,207 + -0.0
1,257 + 0.6
1,285 - 0.6
1,359 - 0.3
1,422 + 0.0
1,960 + 8369 mRNA_1 0.44 0.3
2,268 + 8369 mRNA_1 0.79 0.8
2,361 - 8369 mRNA_1 0.89 -0.0
2,441 + -1.3
2,550 + 0.0
2,552 - -0.1
2,564 + -0.7
2,701 + 3.1
2,839 - 0.8
2,853 + 0.3
2,946 - -0.8
3,005 - -1.6
3,125 - 0.9
3,136 + 1.0