Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8454

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8453: 16821 - Hypothetical Protein, at 1271447 to 1272536 16821 mRNA_8454: 16822 - Hypothetical Protein, at 1273355 to 1274280 16822 mRNA_8455: 16823 - K06013 STE24 STE24 endopeptidase, at 1274960 to 1276666 16823

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,272,439 - 2.1
1,272,461 - -1.2
1,272,577 - -0.8
1,272,629 + 0.3
1,272,726 - 0.3
1,272,768 + -0.5
1,272,908 + -0.8
1,272,995 + 1.0
1,273,070 - 1.2
1,273,129 + 0.5
1,273,167 - -1.5
1,273,175 + -0.4
1,273,176 - -1.2
1,273,180 - -1.9
1,273,189 + -0.3
1,273,217 + -0.1
1,273,219 - 1.0
1,273,302 - -0.3
1,273,302 + 2.5
1,273,337 + 2.0
1,273,412 + 2.9
1,273,448 - 16822 mRNA_8454 0.10 0.3
1,273,462 - 16822 mRNA_8454 0.12 -0.5
1,273,468 + 16822 mRNA_8454 0.12 2.8
1,273,471 + 16822 mRNA_8454 0.13 1.1
1,273,479 - 16822 mRNA_8454 0.13 -0.2
1,273,618 - 16822 mRNA_8454 0.28 0.8
1,273,671 - 16822 mRNA_8454 0.34 -0.6
1,273,672 + 16822 mRNA_8454 0.34 0.8
1,273,776 - 16822 mRNA_8454 0.45 1.0
1,274,028 - 16822 mRNA_8454 0.73 1.0
1,274,185 - 16822 mRNA_8454 0.90 -2.0
1,274,444 + 0.1
1,274,451 - -0.0
1,274,468 + -0.2
1,274,646 - 2.1
1,274,865 - -0.6
1,274,878 - -1.5
1,274,881 - -0.1
1,274,964 + 0.3
1,275,056 + 1.5
1,275,180 - 16823 mRNA_8455 0.13 0.9
1,275,212 - 16823 mRNA_8455 0.15 1.6
1,275,219 + 16823 mRNA_8455 0.15 0.1
1,275,246 + 16823 mRNA_8455 0.17 -0.4