Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8335

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8334: 16702 - BLAST mtf1_muccl ame full transcription factor mtf1 [Licht..., at 961362 to 964238 16702 mRNA_8335: 16703 - HMMPfam-Shwachman-Bodian-Diamond syndrome (SBDS) protein-PF01172,SUPERFAMILY--SSF89895, at 964932 to 965872 16703 mRNA_8336: 16704 - KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase, at 966219 to 967737 16704

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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963,982 + 0.7
964,148 - 0.9
964,156 - 1.2
964,248 + 0.0
964,264 + 0.1
964,279 - 0.9
964,316 - -0.3
964,425 - 1.4
964,430 - 0.3
964,447 - 1.3
964,449 - -0.7
964,455 - 0.9
964,458 - 0.7
964,598 - -1.2
964,599 - -0.6
964,600 - -0.2
964,601 - 0.6
964,606 - 0.3
964,606 - 0.1
964,608 - -0.1
964,612 - -0.4
964,616 + -0.2
964,617 + -0.0
964,618 + -2.4
964,634 + -0.9
964,786 - -0.5
964,796 + 0.4
964,798 + 0.2
964,840 - 1.2
964,840 - -0.6
964,846 + -0.1
964,850 + -0.7
964,855 + -0.8
964,856 + -0.0
964,865 - -1.1
964,866 + -0.7
964,866 + -2.6
964,870 + 0.1
964,875 - 0.0
964,877 - -0.9
964,887 + 0.1
965,048 - 16703 mRNA_8335 0.12 0.1
965,135 - 16703 mRNA_8335 0.22 1.0
965,147 - 16703 mRNA_8335 0.23 0.3
965,151 - 16703 mRNA_8335 0.23 -0.2
965,156 + 16703 mRNA_8335 0.24 -0.8
965,178 - 16703 mRNA_8335 0.26 0.1
965,315 + 16703 mRNA_8335 0.41 -0.1
965,322 + 16703 mRNA_8335 0.41 1.2
965,333 + 16703 mRNA_8335 0.43 0.8
965,338 + 16703 mRNA_8335 0.43 -0.6
965,345 + 16703 mRNA_8335 0.44 -0.8
965,356 + 16703 mRNA_8335 0.45 -1.8
965,470 - 16703 mRNA_8335 0.57 -0.1
965,488 - 16703 mRNA_8335 0.59 -0.6
965,499 + 16703 mRNA_8335 0.60 -1.7
965,510 + 16703 mRNA_8335 0.61 -1.4
965,627 + 16703 mRNA_8335 0.74 0.3
965,816 - 0.6
965,897 + 0.2
965,907 + -0.5
966,078 + 0.3
966,352 - -1.4
966,357 + 0.4
966,378 + 16704 mRNA_8336 0.10 -0.0
966,485 - 16704 mRNA_8336 0.18 2.2
966,512 + 16704 mRNA_8336 0.19 -0.6