Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8238

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8237: 16605 - K04345 PKA protein kinase A, at 734227 to 736264 16605 mRNA_8238: 16606 - KOG2551 Phospholipase/carboxyhydrolase, at 736874 to 737919 16606 mRNA_8239: 16607 - K00101 E1.1.2.3, lldD L-lactate dehydrogenase (cytochrome), at 738207 to 740675 16607

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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735,983 - 16605 mRNA_8237 0.86 2.4
736,010 - 16605 mRNA_8237 0.87 0.6
736,011 + 16605 mRNA_8237 0.88 1.4
736,019 + 16605 mRNA_8237 0.88 1.7
736,025 + 16605 mRNA_8237 0.88 2.1
736,137 - 0.8
736,148 + 0.3
736,169 + -0.0
736,172 - 0.9
736,224 - 0.5
736,309 - -1.5
736,315 + 1.2
736,324 - 0.4
736,329 + -0.2
736,329 - 2.4
736,334 - 1.8
736,350 - -1.8
736,351 + -1.2
736,457 + -0.6
736,479 - 1.8
736,487 - 1.6
736,488 - 0.9
736,488 + -1.3
736,490 - -1.0
736,498 + 1.1
736,500 - -0.1
736,501 - -0.8
736,501 + 1.0
736,502 + 0.8
736,502 + 1.2
736,502 + -1.3
736,503 + -1.2
736,504 - -0.1
736,505 + 1.0
736,505 - 0.3
736,506 - -0.0
736,508 + 1.6
736,510 + -0.1
736,511 - 0.3
736,511 - -0.3
736,544 - -0.4
736,545 + -0.0
736,546 - -0.3
736,566 + 0.5
736,581 + -0.5
736,663 - -0.1
736,675 + -0.0
736,686 + 0.5
736,714 - -1.8
736,714 + 0.3
736,725 - 0.6
736,731 - 0.5
736,745 + -0.3
736,857 - -0.3
736,863 + -1.4
736,866 - 2.0
736,881 + -0.2
737,003 - 16606 mRNA_8238 0.12 0.3
737,004 - 16606 mRNA_8238 0.12 -1.2
737,005 + 16606 mRNA_8238 0.13 -0.4
737,012 - 16606 mRNA_8238 0.13 0.7
737,036 - 16606 mRNA_8238 0.15 0.8
737,317 + 16606 mRNA_8238 0.42 -0.1
737,472 + 16606 mRNA_8238 0.57 0.1
737,573 - 16606 mRNA_8238 0.67 0.2
737,618 + 16606 mRNA_8238 0.71 -0.2
737,725 - 16606 mRNA_8238 0.81 -0.4
737,832 - 0.4
737,838 + 0.2
737,849 - 1.0
737,854 + -2.5
737,857 - -1.5
737,868 + -0.2
737,900 + 0.3
737,902 - -0.6
737,957 + -0.8
737,975 - -0.1
737,976 - -0.1
737,979 + 0.1
737,987 + 0.6
737,989 - -0.0
737,994 - -1.0
738,011 + -0.1
738,016 + 0.1
738,027 - -1.1
738,045 + -0.9
738,048 - -3.6
738,050 - 1.0
738,054 + -2.3
738,072 - -0.7
738,135 + -0.8
738,174 - -0.4
738,179 + -1.2
738,204 - -0.1
738,207 + -1.7
738,215 + 0.4
738,337 + -0.4
738,473 + 16607 mRNA_8239 0.11 0.1
738,488 + 16607 mRNA_8239 0.11 0.5
738,618 - 16607 mRNA_8239 0.17 0.1