Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8162

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8161: 16529 - BLAST Actin cytoskeleton-regulatory complex protein pan1 [R..., at 559527 to 560747 16529 mRNA_8162: 16530 - K01288 KEX1 carboxypeptidase D, at 560914 to 563494 16530 mRNA_8163: 16531 - HMMPfam-Domain of unknown function (DUF4505)-PF14956, at 563626 to 564400 16531

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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559,975 + 16529 mRNA_8161 0.37 -1.6
560,169 - 16529 mRNA_8161 0.53 1.9
560,257 - 16529 mRNA_8161 0.60 1.1
560,450 + 16529 mRNA_8161 0.76 -0.8
560,566 - 16529 mRNA_8161 0.85 0.3
560,927 - 0.1
561,340 - 16530 mRNA_8162 0.17 -1.1
561,357 - 16530 mRNA_8162 0.17 -1.6
561,360 + 16530 mRNA_8162 0.17 1.4
561,629 + 16530 mRNA_8162 0.28 -0.1
561,645 + 16530 mRNA_8162 0.28 0.8
561,923 + 16530 mRNA_8162 0.39 -1.5
561,923 + 16530 mRNA_8162 0.39 -2.1
562,368 - 16530 mRNA_8162 0.56 -0.1
562,610 + 16530 mRNA_8162 0.66 0.0
562,610 + 16530 mRNA_8162 0.66 -0.8
562,632 + 16530 mRNA_8162 0.67 -0.1
562,651 + 16530 mRNA_8162 0.67 -1.3
563,233 + 16530 mRNA_8162 0.90 0.4
563,375 + 1.0
563,389 + 0.4
563,389 + -1.6
563,515 - -2.0
563,524 + -1.6
563,538 + 0.1
563,545 + 0.9
563,547 + -0.5
563,556 + 0.2
563,979 + 16531 mRNA_8163 0.46 -0.3
564,106 - 16531 mRNA_8163 0.62 -0.5
564,110 + 16531 mRNA_8163 0.62 1.8
564,212 - 16531 mRNA_8163 0.76 1.0
564,222 - 16531 mRNA_8163 0.77 -1.4
564,234 - 16531 mRNA_8163 0.78 -0.2
564,410 + 0.1
564,431 - -0.4
564,435 + 0.5