Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8157

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8156: 16524 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 545872 to 548769 16524 mRNA_8157: 16525 - ProSiteProfiles-DOMON domain profile.-PS50836,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665,SUPERFAMILY--SSF49344, at 549657 to 551853 16525 mRNA_8158: 16526 - K14004 SEC13 protein transport protein SEC13, at 552046 to 553498 16526

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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548,792 - 1.4
548,801 + 1.4
548,823 + 2.6
548,843 - 1.0
548,846 - 2.5
548,847 - 1.4
548,850 + 3.2
548,860 + 2.7
548,863 + 2.9
548,865 + 1.6
548,940 - 0.3
548,961 - 2.2
548,963 - 1.7
548,964 - 1.5
548,966 + 1.6
548,973 - 0.9
548,974 - 4.0
548,987 + 1.9
548,990 + 0.4
548,992 + 2.4
548,995 - 2.9
549,025 - 2.6
549,025 - 1.0
549,027 + 1.2
549,029 - 3.6
549,030 - 2.4
549,036 + 1.2
549,044 + 1.3
549,045 + 1.6
549,059 - 2.3
549,064 + 2.5
549,064 + 1.7
549,108 + 2.5
549,109 + 2.4
549,109 - 1.7
549,140 - 2.7
549,143 - 1.9
549,207 + 2.6
549,230 + 2.0
549,275 + 1.8
549,276 + 1.1
549,285 + 1.4
549,286 - 2.7
549,287 - 2.5
549,291 - 2.0
549,293 - 2.4
549,293 - 1.3
549,297 - -0.4
549,298 - 0.9
549,299 + 3.6
549,299 - 0.7
549,300 + 1.7
549,302 - 1.3
549,314 - 2.7
549,323 + 2.8
549,324 + 1.6
549,332 - 1.8
549,333 - 1.3
549,333 - 0.4
549,334 + 0.1
549,335 + 2.4
549,341 + 1.0
549,346 + 0.6
549,349 + 1.6
549,361 + 0.5
549,364 + 2.5
549,364 - 3.0
549,405 - 0.6
549,406 + 1.5
549,419 - 0.6
549,423 - -0.2
549,424 + 0.4
549,424 - 0.1
549,426 + -0.5
549,429 - -0.1
549,430 - 1.5
549,435 + 0.8
549,435 - 0.0
549,440 + -0.8
549,441 + 0.9
549,469 + 1.7
549,482 - 1.4
549,566 - -0.3
549,576 - -0.9
549,595 + 1.7
549,597 - 2.8
549,598 + 2.1
549,610 - 0.1
549,616 + 0.5
549,619 + 0.9
549,624 + 0.6
549,625 - 0.7
549,634 + 1.1
549,642 - 0.0
549,645 + 2.1
549,654 + -0.1
549,659 - 1.1
549,672 - 1.1
549,682 - 1.8
549,685 - 0.0
549,686 + 0.1
549,687 - 1.2
549,689 + 1.3
549,692 + -0.7
549,700 - -1.9
549,701 + 2.4
549,713 + -0.3
549,713 + 0.5
549,746 + 0.9
549,754 + 1.8
549,779 - 1.9
549,822 - 1.6
549,826 - 0.1
549,835 + 1.7
549,840 - 1.0
549,842 - 0.9
549,847 + 2.0
549,850 - -0.2
549,853 - 0.3
549,854 + -1.1
549,854 - -1.6
549,856 - -2.6
549,859 - -2.8
549,860 + 3.8
549,862 - 0.0
549,862 - 1.3
549,869 + 1.2
549,871 + -0.1
549,871 + 0.8
549,873 - -0.3
549,875 + 0.5
549,876 - 1.5
549,877 + 16525 mRNA_8157 0.10 0.2
549,878 + 16525 mRNA_8157 0.10 1.0
549,879 + 16525 mRNA_8157 0.10 0.8
549,881 + 16525 mRNA_8157 0.10 1.8
549,881 + 16525 mRNA_8157 0.10 0.7
549,881 - 16525 mRNA_8157 0.10 -1.3
549,883 + 16525 mRNA_8157 0.10 -0.1
549,921 - 16525 mRNA_8157 0.12 -1.4
549,923 - 16525 mRNA_8157 0.12 -0.5
549,930 + 16525 mRNA_8157 0.12 2.6
549,931 - 16525 mRNA_8157 0.12 2.0
549,936 - 16525 mRNA_8157 0.13 1.5
549,941 + 16525 mRNA_8157 0.13 0.4
549,941 + 16525 mRNA_8157 0.13 -0.3
549,944 - 16525 mRNA_8157 0.13 0.6
549,946 + 16525 mRNA_8157 0.13 1.4
549,950 - 16525 mRNA_8157 0.13 -0.8
549,950 + 16525 mRNA_8157 0.13 1.2
549,958 - 16525 mRNA_8157 0.14 -0.1
549,961 + 16525 mRNA_8157 0.14 0.7
549,971 - 16525 mRNA_8157 0.14 -2.2
549,971 + 16525 mRNA_8157 0.14 -1.8
549,972 + 16525 mRNA_8157 0.14 0.3
549,976 - 16525 mRNA_8157 0.15 1.2
550,003 - 16525 mRNA_8157 0.16 0.8
550,011 - 16525 mRNA_8157 0.16 1.7
550,012 - 16525 mRNA_8157 0.16 2.2
550,014 - 16525 mRNA_8157 0.16 0.7
550,014 - 16525 mRNA_8157 0.16 0.3
550,016 - 16525 mRNA_8157 0.16 -0.6
550,021 + 16525 mRNA_8157 0.17 0.6
550,022 + 16525 mRNA_8157 0.17 0.6
550,026 - 16525 mRNA_8157 0.17 -0.4
550,028 - 16525 mRNA_8157 0.17 0.8
550,029 - 16525 mRNA_8157 0.17 -1.2
550,029 - 16525 mRNA_8157 0.17 3.2
550,030 - 16525 mRNA_8157 0.17 2.0
550,030 - 16525 mRNA_8157 0.17 1.3
550,034 + 16525 mRNA_8157 0.17 -1.1
550,035 + 16525 mRNA_8157 0.17 0.4
550,048 - 16525 mRNA_8157 0.18 0.7
550,048 - 16525 mRNA_8157 0.18 -0.3
550,048 - 16525 mRNA_8157 0.18 1.8
550,051 + 16525 mRNA_8157 0.18 -0.1
550,056 - 16525 mRNA_8157 0.18 1.2
550,062 - 16525 mRNA_8157 0.18 2.6
550,064 - 16525 mRNA_8157 0.19 0.1
550,064 - 16525 mRNA_8157 0.19 1.3
550,064 - 16525 mRNA_8157 0.19 -0.1
550,084 - 16525 mRNA_8157 0.19 -0.2
550,085 + 16525 mRNA_8157 0.19 1.1
550,086 + 16525 mRNA_8157 0.20 0.3
550,086 + 16525 mRNA_8157 0.20 0.7
550,103 - 16525 mRNA_8157 0.20 -0.2
550,106 - 16525 mRNA_8157 0.20 -1.3
550,117 - 16525 mRNA_8157 0.21 -0.1
550,125 - 16525 mRNA_8157 0.21 -0.6
550,128 + 16525 mRNA_8157 0.21 -0.4
550,140 - 16525 mRNA_8157 0.22 0.9
550,146 + 16525 mRNA_8157 0.22 -0.5
550,150 + 16525 mRNA_8157 0.22 0.9
550,151 - 16525 mRNA_8157 0.22 -0.4
550,157 + 16525 mRNA_8157 0.23 4.0
550,161 - 16525 mRNA_8157 0.23 1.0
550,161 - 16525 mRNA_8157 0.23 2.0
550,165 - 16525 mRNA_8157 0.23 -0.4
550,165 - 16525 mRNA_8157 0.23 0.2
550,169 - 16525 mRNA_8157 0.23 0.1
550,174 - 16525 mRNA_8157 0.24 -0.2
550,178 - 16525 mRNA_8157 0.24 1.1
550,178 - 16525 mRNA_8157 0.24 -0.2
550,180 - 16525 mRNA_8157 0.24 -0.1
550,184 - 16525 mRNA_8157 0.24 1.5
550,185 + 16525 mRNA_8157 0.24 -1.8
550,192 - 16525 mRNA_8157 0.24 -0.2
550,203 - 16525 mRNA_8157 0.25 1.2
550,208 + 16525 mRNA_8157 0.25 0.1
550,208 + 16525 mRNA_8157 0.25 -0.1
550,217 - 16525 mRNA_8157 0.25 -0.0
550,223 - 16525 mRNA_8157 0.26 0.8
550,227 - 16525 mRNA_8157 0.26 0.3
550,228 + 16525 mRNA_8157 0.26 1.6
550,230 + 16525 mRNA_8157 0.26 0.2
550,232 - 16525 mRNA_8157 0.26 0.3
550,238 + 16525 mRNA_8157 0.26 -0.2
550,247 - 16525 mRNA_8157 0.27 1.6
550,262 + 16525 mRNA_8157 0.28 0.4
550,268 - 16525 mRNA_8157 0.28 -1.7
550,289 + 16525 mRNA_8157 0.29 -0.5
550,290 - 16525 mRNA_8157 0.29 -1.1
550,290 + 16525 mRNA_8157 0.29 2.1
550,297 - 16525 mRNA_8157 0.29 -0.1
550,297 - 16525 mRNA_8157 0.29 -0.6
550,297 - 16525 mRNA_8157 0.29 0.9
550,307 - 16525 mRNA_8157 0.30 -0.3
550,307 - 16525 mRNA_8157 0.30 -0.9
550,315 + 16525 mRNA_8157 0.30 -0.0
550,321 - 16525 mRNA_8157 0.30 -2.1
550,322 - 16525 mRNA_8157 0.30 0.9
550,330 + 16525 mRNA_8157 0.31 -1.6
550,330 - 16525 mRNA_8157 0.31 -0.9
550,330 + 16525 mRNA_8157 0.31 1.0
550,331 - 16525 mRNA_8157 0.31 2.4
550,332 - 16525 mRNA_8157 0.31 -0.5
550,334 - 16525 mRNA_8157 0.31 0.2
550,339 + 16525 mRNA_8157 0.31 3.1
550,369 - 16525 mRNA_8157 0.32 0.1
550,369 + 16525 mRNA_8157 0.32 -0.8
550,374 - 16525 mRNA_8157 0.33 0.2
550,399 - 16525 mRNA_8157 0.34 -0.0
550,452 - 16525 mRNA_8157 0.36 -0.8
550,473 + 16525 mRNA_8157 0.37 -0.3
550,478 - 16525 mRNA_8157 0.37 0.6
550,503 - 16525 mRNA_8157 0.39 0.6
550,506 + 16525 mRNA_8157 0.39 0.3
550,509 + 16525 mRNA_8157 0.39 0.1
550,529 - 16525 mRNA_8157 0.40 -0.1
550,595 - 16525 mRNA_8157 0.43 -0.2
550,772 - 16525 mRNA_8157 0.51 1.1
550,785 - 16525 mRNA_8157 0.51 -1.1
551,404 - 16525 mRNA_8157 0.80 2.4
551,491 + 16525 mRNA_8157 0.83 -0.2
551,522 + 16525 mRNA_8157 0.85 -0.4
551,662 - 1.0
551,789 - 0.5
551,926 - -0.4
551,974 + 0.0
552,672 - 16526 mRNA_8158 0.43 -2.8