Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8131

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8130: 16498 - BLAST transcription factor [Pseudozyma hubeiensis SY62], at 488795 to 491438 16498 mRNA_8131: 16499 - KOG2431 1, 2-alpha-mannosidase, at 491877 to 495566 16499 mRNA_8132: 16500 - SUPERFAMILY--SSF52047, at 495876 to 497390 16500

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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491,069 + 16498 mRNA_8130 0.86 0.2
491,304 + 0.4
491,411 - 0.2
491,559 + -0.2
491,732 - 0.1
491,740 + 2.3
491,877 - 1.9
492,218 + -0.1
492,362 + 16499 mRNA_8131 0.13 -2.1
492,380 + 16499 mRNA_8131 0.14 0.5
492,478 - 16499 mRNA_8131 0.16 1.0
493,442 - 16499 mRNA_8131 0.42 -0.3
493,546 + 16499 mRNA_8131 0.45 -1.2
493,549 - 16499 mRNA_8131 0.45 1.2
493,829 + 16499 mRNA_8131 0.53 0.7
494,207 + 16499 mRNA_8131 0.63 0.7
494,748 - 16499 mRNA_8131 0.78 0.1
495,187 + 16499 mRNA_8131 0.90 -0.1
495,211 - 2.4
495,215 - -0.1
495,341 - 0.2
495,348 - 0.5
495,349 + 1.6
495,356 - 0.4
495,618 + -0.3
495,621 - 1.8
495,622 + 0.6
495,624 - -0.2
495,624 - 0.3
495,625 + 0.9
495,638 + 0.7
495,651 + 1.7
495,800 - 0.5
495,801 + -0.1
495,806 - -0.2
495,818 + -0.7
495,957 - 0.4
496,097 - 16500 mRNA_8132 0.15 -1.2
496,104 + 16500 mRNA_8132 0.15 -1.1
496,105 - 16500 mRNA_8132 0.15 0.6
496,106 + 16500 mRNA_8132 0.15 -0.6
496,391 + 16500 mRNA_8132 0.34 -0.1
496,401 + 16500 mRNA_8132 0.35 -1.3
496,525 - 16500 mRNA_8132 0.43 -2.0