Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8102

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8101: 16469 - Hypothetical Protein, at 419844 to 420309 16469 mRNA_8102: 16470 - Hypothetical Protein, at 420636 to 421256 16470 mRNA_8103: 16471 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 421864 to 423445 16471

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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420,105 - 16469 mRNA_8101 0.56 0.8
420,108 - 16469 mRNA_8101 0.57 0.2
420,126 - 16469 mRNA_8101 0.61 -0.7
420,274 - 1.8
420,390 - 1.1
420,393 + 0.9
420,404 - -1.3
420,432 + 0.4
420,437 - -0.9
420,708 - 16470 mRNA_8102 0.12 0.6
420,866 - 16470 mRNA_8102 0.37 -0.4
421,191 + 16470 mRNA_8102 0.89 -0.0
421,327 + -0.8
421,593 + -1.1
421,597 - -0.9
421,598 + -1.5
421,607 - -0.5
421,630 + 1.5
421,630 - -0.7
421,762 - 0.1
421,769 - -0.3
421,883 - 1.5
421,886 - -2.5
421,905 - -0.9
422,026 - 16471 mRNA_8103 0.10 -2.4
422,190 - 16471 mRNA_8103 0.21 0.0