Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8077

Experiments: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8076: 16444 - Hypothetical Protein, at 368382 to 369179 16444 mRNA_8077: 16445 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 369539 to 370935 16445 mRNA_8078: 16446 - HMMPfam-ER membrane protein SH3-PF08229,SMART-ER membrane protein SH3-SM00786, at 371130 to 372195 16446

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
368,553 + 16444 mRNA_8076 0.21 1.4
368,564 + 16444 mRNA_8076 0.23 -1.0
368,574 - 16444 mRNA_8076 0.24 -0.1
368,581 + 16444 mRNA_8076 0.25 0.2
368,584 + 16444 mRNA_8076 0.25 -0.7
368,585 - 16444 mRNA_8076 0.25 -0.2
368,595 - 16444 mRNA_8076 0.27 2.4
368,596 + 16444 mRNA_8076 0.27 0.1
368,602 - 16444 mRNA_8076 0.28 -0.7
368,606 - 16444 mRNA_8076 0.28 -2.2
368,607 + 16444 mRNA_8076 0.28 -0.1
368,608 + 16444 mRNA_8076 0.28 -1.5
368,610 - 16444 mRNA_8076 0.29 0.5
368,611 + 16444 mRNA_8076 0.29 -1.2
368,611 + 16444 mRNA_8076 0.29 1.1
368,623 + 16444 mRNA_8076 0.30 0.2
368,624 - 16444 mRNA_8076 0.30 -2.3
368,641 + 16444 mRNA_8076 0.32 -0.2
368,642 - 16444 mRNA_8076 0.33 -0.8
368,642 - 16444 mRNA_8076 0.33 -1.2
368,664 - 16444 mRNA_8076 0.35 0.3
368,668 + 16444 mRNA_8076 0.36 -0.0
368,678 - 16444 mRNA_8076 0.37 -0.8
368,693 - 16444 mRNA_8076 0.39 1.0
368,693 + 16444 mRNA_8076 0.39 1.7
368,696 + 16444 mRNA_8076 0.39 -1.1
368,718 + 16444 mRNA_8076 0.42 -0.9
368,724 - 16444 mRNA_8076 0.43 -1.7
368,727 + 16444 mRNA_8076 0.43 -1.2
368,738 - 16444 mRNA_8076 0.45 -0.4
368,743 + 16444 mRNA_8076 0.45 0.7
368,744 - 16444 mRNA_8076 0.45 0.0
368,745 + 16444 mRNA_8076 0.45 -0.6
368,747 - 16444 mRNA_8076 0.46 -1.4
368,747 - 16444 mRNA_8076 0.46 -0.5
368,763 - 16444 mRNA_8076 0.48 -0.4
368,765 + 16444 mRNA_8076 0.48 0.2
368,766 + 16444 mRNA_8076 0.48 -0.7
368,769 - 16444 mRNA_8076 0.48 -0.1
368,770 - 16444 mRNA_8076 0.49 -0.1
368,774 - 16444 mRNA_8076 0.49 -1.5
368,775 + 16444 mRNA_8076 0.49 -1.3
368,775 + 16444 mRNA_8076 0.49 -0.2
368,775 + 16444 mRNA_8076 0.49 -0.2
368,776 - 16444 mRNA_8076 0.49 -0.8
368,779 - 16444 mRNA_8076 0.50 0.8
368,786 + 16444 mRNA_8076 0.51 -0.4
368,788 + 16444 mRNA_8076 0.51 -0.6
368,796 + 16444 mRNA_8076 0.52 -1.7
368,796 + 16444 mRNA_8076 0.52 1.2
368,817 - 16444 mRNA_8076 0.55 -2.5
368,881 + 16444 mRNA_8076 0.63 -1.0
368,912 + 16444 mRNA_8076 0.66 2.2
368,918 + 16444 mRNA_8076 0.67 1.0
368,928 + 16444 mRNA_8076 0.68 -0.3
368,932 + 16444 mRNA_8076 0.69 -0.1
368,932 + 16444 mRNA_8076 0.69 -1.8
368,936 - 16444 mRNA_8076 0.69 -1.7
368,938 - 16444 mRNA_8076 0.70 0.7
368,940 - 16444 mRNA_8076 0.70 0.2
368,940 - 16444 mRNA_8076 0.70 -0.2
368,943 - 16444 mRNA_8076 0.70 -1.3
368,943 - 16444 mRNA_8076 0.70 0.6
368,949 - 16444 mRNA_8076 0.71 -2.8
368,949 - 16444 mRNA_8076 0.71 0.4
368,950 + 16444 mRNA_8076 0.71 -1.4
368,955 + 16444 mRNA_8076 0.72 0.3
368,956 - 16444 mRNA_8076 0.72 -2.1
368,956 + 16444 mRNA_8076 0.72 -0.2
368,956 + 16444 mRNA_8076 0.72 -1.5
368,958 - 16444 mRNA_8076 0.72 0.2
368,958 + 16444 mRNA_8076 0.72 -1.5
368,959 + 16444 mRNA_8076 0.72 0.5
368,961 - 16444 mRNA_8076 0.73 -0.4
368,969 - 16444 mRNA_8076 0.74 -0.2
368,974 + 16444 mRNA_8076 0.74 0.1
368,979 - 16444 mRNA_8076 0.75 -0.1
368,982 + 16444 mRNA_8076 0.75 -1.1
368,984 + 16444 mRNA_8076 0.75 0.2
368,988 - 16444 mRNA_8076 0.76 2.1
368,988 + 16444 mRNA_8076 0.76 -0.2
368,989 - 16444 mRNA_8076 0.76 -0.2
369,001 + 16444 mRNA_8076 0.78 -0.4
369,045 - 16444 mRNA_8076 0.83 -0.5
369,049 + 16444 mRNA_8076 0.84 -0.7
369,058 - 16444 mRNA_8076 0.85 -0.0
369,059 - 16444 mRNA_8076 0.85 -0.4
369,073 + 16444 mRNA_8076 0.87 -1.1
369,075 - 16444 mRNA_8076 0.87 -1.8
369,080 + 16444 mRNA_8076 0.87 1.0
369,084 + 16444 mRNA_8076 0.88 -0.6
369,110 + 1.0
369,170 - 0.2
369,203 - 0.2
369,207 - -0.2
369,211 + -1.3
369,213 - 1.0
369,242 + 0.3
369,259 + -0.5
369,272 - 0.9
369,286 + -0.5
369,323 + -0.5
369,330 - 1.8
369,331 + -0.4
369,337 - -0.9
369,339 - -1.1
369,343 + 0.3
369,343 - -0.0
369,345 + 0.8
369,348 + 0.1
369,349 + -1.9
369,354 + 1.0
369,354 - 0.8
369,355 - 0.2
369,355 + -0.3
369,359 - 0.1
369,361 + -0.1
369,366 + 0.3
369,366 + 0.6
369,366 + -0.3
369,370 + 2.6
369,370 + -1.0
369,371 - -1.6
369,372 - 1.0
369,372 - -1.5
369,372 + -1.7
369,373 - -2.2
369,373 - -1.5
369,375 - -1.0
369,375 + -0.2
369,376 + 1.0
369,382 + -0.8
369,394 - 0.4
369,407 - -0.7
369,511 + 1.6
369,514 - -0.4
369,514 - -0.0
369,518 - -0.3
369,529 - -1.0
369,534 - 0.5
369,536 - 0.5
369,540 + -1.1
369,547 - -1.2
369,549 + -1.0
369,560 - 1.2
369,561 - 0.6
369,618 - -0.0
369,639 + -1.5
369,684 - 16445 mRNA_8077 0.10 -0.2
369,689 - 16445 mRNA_8077 0.11 0.3
369,695 + 16445 mRNA_8077 0.11 0.9
369,709 + 16445 mRNA_8077 0.12 -1.8
369,711 + 16445 mRNA_8077 0.12 2.6
369,718 - 16445 mRNA_8077 0.13 -1.0
369,731 - 16445 mRNA_8077 0.14 -1.6
369,740 + 16445 mRNA_8077 0.14 -1.1
369,744 - 16445 mRNA_8077 0.15 1.9
369,745 + 16445 mRNA_8077 0.15 -0.1
369,756 + 16445 mRNA_8077 0.16 2.3
369,760 + 16445 mRNA_8077 0.16 -0.2
369,768 + 16445 mRNA_8077 0.16 -0.1
369,771 + 16445 mRNA_8077 0.17 -1.1
369,778 - 16445 mRNA_8077 0.17 0.3
369,780 + 16445 mRNA_8077 0.17 0.8
369,792 + 16445 mRNA_8077 0.18 0.5
369,805 - 16445 mRNA_8077 0.19 0.1
369,822 - 16445 mRNA_8077 0.20 0.4
369,827 - 16445 mRNA_8077 0.21 -1.0
369,850 + 16445 mRNA_8077 0.22 -0.5
369,850 + 16445 mRNA_8077 0.22 0.5
369,852 + 16445 mRNA_8077 0.22 0.4
369,862 + 16445 mRNA_8077 0.23 -0.1
369,863 - 16445 mRNA_8077 0.23 1.7
369,863 - 16445 mRNA_8077 0.23 -0.2
369,863 - 16445 mRNA_8077 0.23 0.2
369,863 - 16445 mRNA_8077 0.23 0.3
369,864 + 16445 mRNA_8077 0.23 -0.0
369,866 + 16445 mRNA_8077 0.23 -0.6
369,868 - 16445 mRNA_8077 0.24 -0.5
369,891 - 16445 mRNA_8077 0.25 -1.1
369,919 + 16445 mRNA_8077 0.27 0.2
369,929 - 16445 mRNA_8077 0.28 0.6
369,956 + 16445 mRNA_8077 0.30 -0.2
369,966 + 16445 mRNA_8077 0.31 1.9
369,979 - 16445 mRNA_8077 0.31 -1.0
369,990 - 16445 mRNA_8077 0.32 -1.2
369,996 + 16445 mRNA_8077 0.33 1.6
370,020 + 16445 mRNA_8077 0.34 -0.3
370,030 - 16445 mRNA_8077 0.35 -0.6
370,032 - 16445 mRNA_8077 0.35 -0.7
370,047 - 16445 mRNA_8077 0.36 0.2
370,048 + 16445 mRNA_8077 0.36 -0.9
370,055 - 16445 mRNA_8077 0.37 -1.3
370,056 - 16445 mRNA_8077 0.37 1.3
370,057 + 16445 mRNA_8077 0.37 -0.7
370,071 - 16445 mRNA_8077 0.38 1.0
370,073 - 16445 mRNA_8077 0.38 0.2
370,091 - 16445 mRNA_8077 0.40 -0.4
370,094 + 16445 mRNA_8077 0.40 0.2
370,096 - 16445 mRNA_8077 0.40 -0.7
370,101 + 16445 mRNA_8077 0.40 -1.3
370,102 - 16445 mRNA_8077 0.40 -0.8
370,109 - 16445 mRNA_8077 0.41 0.3
370,110 + 16445 mRNA_8077 0.41 -0.8
370,118 + 16445 mRNA_8077 0.41 -1.3
370,138 + 16445 mRNA_8077 0.43 1.2
370,141 + 16445 mRNA_8077 0.43 -0.6
370,146 - 16445 mRNA_8077 0.43 -0.4
370,156 - 16445 mRNA_8077 0.44 -1.1
370,163 - 16445 mRNA_8077 0.45 -0.1
370,215 + 16445 mRNA_8077 0.48 -0.4
370,241 - 16445 mRNA_8077 0.50 -0.4
370,260 + 16445 mRNA_8077 0.52 0.1
370,442 - 16445 mRNA_8077 0.65 -0.1
370,450 - 16445 mRNA_8077 0.65 -1.2
370,473 - 16445 mRNA_8077 0.67 -1.1
370,483 + 16445 mRNA_8077 0.68 -0.3
370,539 + 16445 mRNA_8077 0.72 1.3
370,608 - 16445 mRNA_8077 0.77 -1.1
370,651 - 16445 mRNA_8077 0.80 -0.4
370,674 + 16445 mRNA_8077 0.81 1.0
370,770 + 16445 mRNA_8077 0.88 -1.1
370,912 + -0.5
371,081 + -0.3
371,207 - 1.9
371,215 + 1.0
371,222 + -0.7
371,782 - 16446 mRNA_8078 0.61 0.0
371,802 - 16446 mRNA_8078 0.63 1.0
371,827 - 16446 mRNA_8078 0.65 0.7