Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8070

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8069: 16437 - K11240 MSG5 tyrosine-protein phosphatase MSG5, at 349266 to 352237 16437 mRNA_8070: 16438 - KOG2744 DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain, at 352971 to 356378 16438 mRNA_8071: 16439 - Hypothetical Protein, at 357161 to 359241 16439

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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351,975 + -0.9
352,103 - -0.4
352,112 + -0.2
352,381 - 3.6
352,381 - -0.9
352,413 - -0.2
352,415 - -0.3
352,422 - 0.2
352,547 - 1.0
352,692 - 0.5
352,692 - 0.7
352,693 - 0.6
352,700 + -0.6
352,709 - 0.1
352,714 + -0.7
352,855 - -0.1
352,884 - 0.6
352,999 - 1.4
353,272 - -0.6
353,425 - 16438 mRNA_8070 0.13 -0.8
353,440 + 16438 mRNA_8070 0.14 2.3
353,507 - 16438 mRNA_8070 0.16 0.7
353,521 + 16438 mRNA_8070 0.16 1.3
354,060 + 16438 mRNA_8070 0.32 -0.0
354,141 + 16438 mRNA_8070 0.34 0.6
354,298 + 16438 mRNA_8070 0.39 2.4
354,417 + 16438 mRNA_8070 0.42 2.4
354,542 - 16438 mRNA_8070 0.46 2.0
355,010 + 16438 mRNA_8070 0.60 0.3
355,170 + 16438 mRNA_8070 0.65 0.6
355,201 - 16438 mRNA_8070 0.65 0.3
355,461 - 16438 mRNA_8070 0.73 2.3
355,720 - 16438 mRNA_8070 0.81 0.1
355,736 + 16438 mRNA_8070 0.81 1.2
355,993 - 16438 mRNA_8070 0.89 0.2
356,002 + 16438 mRNA_8070 0.89 0.7
356,006 + 16438 mRNA_8070 0.89 -0.8
356,185 - -1.6
356,224 + 0.4
356,228 + 1.4
356,331 - 0.0
356,336 + 0.9
356,344 + 2.5
356,361 + 0.5
356,372 - 0.3
356,373 - -1.2
356,374 - 2.2
356,389 + 1.5
356,390 + 1.5
356,411 - -0.2
356,431 - -1.6
356,460 + -0.3
356,492 + 0.7
356,492 + 0.2
356,499 + -0.0
356,506 + -0.6
356,533 + 1.6
356,534 - 0.8
356,597 - 1.2
356,608 + -0.3
356,611 - -0.6
356,613 - 0.5
356,614 + 0.4
356,614 + 1.2
356,614 - -0.5
356,618 + 0.2
356,620 + 0.4
356,626 + -0.4
356,626 + 0.1
356,628 - -0.3
356,630 - -0.3
356,633 - 1.8
356,636 + -0.3
356,639 - 0.8
356,658 - 1.3
356,764 - -0.7
356,852 - 0.6
356,866 - -0.8
356,886 - 0.4
356,909 + 0.3
356,916 + -0.4
356,918 - 0.8
356,934 + -1.5
356,934 - -1.2
356,935 + 1.5
356,936 - -0.4
356,949 - 0.7
356,950 - 0.0
356,967 - -0.9
356,997 + -0.2
357,026 + 1.3
357,077 + 0.1
357,128 - -1.4
357,223 + 1.8