Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8067

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8066: 16434 - K20181 VPS18, PEP3 vacuolar protein sorting-associated protein 18, at 341792 to 345856 16434 mRNA_8067: 16435 - K12399 AP3S AP-3 complex subunit sigma, at 346568 to 347476 16435 mRNA_8068: 16436 - KOG1198 Zinc-binding oxidoreductase, at 347734 to 349027 16436

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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345,866 + 0.9
346,030 - -0.6
346,117 - -1.1
346,124 + 1.7
346,124 + 0.4
346,130 + -1.1
346,161 + 1.7
346,258 - -1.6
346,280 - 0.6
346,287 - -3.6
346,288 + 0.8
346,439 + 1.1
346,445 - 0.9
346,453 + 0.7
346,458 - -0.3
346,462 - 1.1
346,470 - 0.4
346,472 - -0.0
346,541 + 2.0
346,542 - 0.4
347,015 + 16435 mRNA_8067 0.49 0.4
347,088 + 16435 mRNA_8067 0.57 1.4
347,286 + 16435 mRNA_8067 0.79 0.5
347,476 - 1.5
347,504 + 0.4
347,563 + 0.7
347,658 - -0.7
347,660 + 0.6
347,674 - -0.0
347,754 + 0.6
347,772 - -1.6
347,779 + -0.7
347,798 + -1.0
347,799 - -0.4
347,918 - 16436 mRNA_8068 0.14 1.4
347,920 - 16436 mRNA_8068 0.14 0.6
347,930 - 16436 mRNA_8068 0.15 0.3
347,970 + 16436 mRNA_8068 0.18 0.9
347,973 + 16436 mRNA_8068 0.18 -1.0
347,986 + 16436 mRNA_8068 0.19 -1.8
348,013 + 16436 mRNA_8068 0.22 0.5
348,258 - 16436 mRNA_8068 0.40 -0.6
348,296 + 16436 mRNA_8068 0.43 0.5
348,393 - 16436 mRNA_8068 0.51 1.1