Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8026

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8025: 16393 - KOG0118 FOG RRM domain, at 235031 to 239261 16393 mRNA_8026: 16394 - K03515 REV1 DNA repair protein REV1, at 239573 to 243561 16394 mRNA_8027: 16395 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 243826 to 244717 16395

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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238,894 - 0.8
238,928 - -0.5
239,064 + 0.9
239,345 + -0.4
239,352 + 0.8
239,353 + -0.6
239,357 + 1.6
239,374 + -0.0
239,484 + -0.5
239,490 - -1.6
239,490 - -0.1
239,496 - 0.2
239,507 - 0.7
239,511 - -0.5
239,525 + 1.2
239,534 + -1.1
239,631 - 0.7
239,678 + -1.0
239,698 + -0.5
239,837 + 1.7
239,842 + 0.7
239,843 + -1.1
239,848 - -0.4
239,849 + -1.5
239,866 - 2.0
239,979 + 16394 mRNA_8026 0.10 -1.3
240,060 + 16394 mRNA_8026 0.12 -2.0
240,092 + 16394 mRNA_8026 0.13 0.1
240,125 - 16394 mRNA_8026 0.14 1.9
240,263 - 16394 mRNA_8026 0.17 -1.4
240,268 + 16394 mRNA_8026 0.17 -1.6
240,402 - 16394 mRNA_8026 0.21 -0.0
240,540 - 16394 mRNA_8026 0.24 -0.1
240,860 - 16394 mRNA_8026 0.32 1.3
241,592 + 16394 mRNA_8026 0.51 -1.3
241,676 - 16394 mRNA_8026 0.53 1.4
241,723 - 16394 mRNA_8026 0.54 -2.1
241,761 - 16394 mRNA_8026 0.55 -1.1
241,769 + 16394 mRNA_8026 0.55 -0.9
241,863 + 16394 mRNA_8026 0.57 -0.3
241,904 + 16394 mRNA_8026 0.58 0.1
241,958 - 16394 mRNA_8026 0.60 -0.4
241,958 - 16394 mRNA_8026 0.60 0.8
242,232 + 16394 mRNA_8026 0.67 -2.9
242,276 - 16394 mRNA_8026 0.68 -0.9
242,360 - 16394 mRNA_8026 0.70 -0.7
242,445 - 16394 mRNA_8026 0.72 2.1
242,591 - 16394 mRNA_8026 0.76 0.4
242,713 - 16394 mRNA_8026 0.79 2.3
242,776 - 16394 mRNA_8026 0.80 -0.2
242,795 + 16394 mRNA_8026 0.81 -0.1
242,890 - 16394 mRNA_8026 0.83 0.2
243,022 - 16394 mRNA_8026 0.86 -2.2
243,065 - 16394 mRNA_8026 0.88 -1.4
243,107 - 16394 mRNA_8026 0.89 -1.4
243,115 + 16394 mRNA_8026 0.89 0.2
243,180 + -0.1
243,214 + -0.6
243,245 - -0.9
243,255 + -0.2
243,320 + 0.7
243,341 + -0.9
243,356 - 0.2
243,503 - -0.0
243,505 + -2.4
243,515 - 0.1
243,553 + 0.9
243,659 + -0.2
243,827 - -1.0
243,974 - 16395 mRNA_8027 0.17 -1.3
243,976 + 16395 mRNA_8027 0.17 -1.0
243,978 - 16395 mRNA_8027 0.17 0.9
244,011 - 16395 mRNA_8027 0.21 -1.2
244,081 - 16395 mRNA_8027 0.29 -0.4
244,106 - 16395 mRNA_8027 0.31 -1.3
244,141 - 16395 mRNA_8027 0.35 -0.6