Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7967

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7966: 16334 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 110681 to 111565 16334 mRNA_7967: 16335 - Hypothetical Protein, at 112365 to 112943 16335 mRNA_7968: 16336 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 112971 to 114201 16336

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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111,473 + 16334 mRNA_7966 0.89 0.7
111,605 + -1.1
111,662 + 3.2
111,667 - 1.5
111,682 + -0.9
111,682 - 1.5
111,728 + -0.3
111,753 + -1.0
111,755 + -0.1
111,761 - 1.3
111,764 + -0.2
111,767 - 1.2
111,772 - 0.5
111,780 + 1.8
111,793 - 1.2
111,935 + 0.5
112,224 + -1.1
112,225 + 2.1
112,239 - -0.4
112,275 + 1.8
112,360 - -0.2
112,520 + 16335 mRNA_7967 0.27 -2.3
112,520 - 16335 mRNA_7967 0.27 0.8
112,539 + 16335 mRNA_7967 0.30 1.3
112,539 + 16335 mRNA_7967 0.30 -0.5
112,662 + 16335 mRNA_7967 0.51 0.2
112,677 - 16335 mRNA_7967 0.54 0.4
112,678 + 16335 mRNA_7967 0.54 1.8
112,816 - 16335 mRNA_7967 0.78 0.7
112,820 - 16335 mRNA_7967 0.79 -1.9
112,999 + -1.1
113,203 + 16336 mRNA_7968 0.19 0.3
113,231 + 16336 mRNA_7968 0.21 0.9
113,255 - 16336 mRNA_7968 0.23 2.3
113,255 - 16336 mRNA_7968 0.23 -0.9
113,257 - 16336 mRNA_7968 0.23 0.1
113,286 + 16336 mRNA_7968 0.26 -0.7
113,286 + 16336 mRNA_7968 0.26 0.4
113,286 + 16336 mRNA_7968 0.26 -0.5
113,429 + 16336 mRNA_7968 0.37 0.2
113,442 - 16336 mRNA_7968 0.38 0.5
113,502 - 16336 mRNA_7968 0.43 1.9
113,508 - 16336 mRNA_7968 0.44 -1.0
113,532 + 16336 mRNA_7968 0.46 0.5
113,564 - 16336 mRNA_7968 0.48 1.4
113,567 + 16336 mRNA_7968 0.48 0.4
113,568 - 16336 mRNA_7968 0.48 -0.0
113,576 + 16336 mRNA_7968 0.49 0.2
113,590 - 16336 mRNA_7968 0.50 -0.0
113,649 + 16336 mRNA_7968 0.55 0.2
113,690 - 16336 mRNA_7968 0.58 -1.1
113,792 - 16336 mRNA_7968 0.67 1.6
113,860 - 16336 mRNA_7968 0.72 -0.7
113,919 + 16336 mRNA_7968 0.77 1.2