Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7962

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7961: 16329 - HMMPfam-Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family-PF10342, at 104119 to 104997 16329 mRNA_7962: 16330 - K08967 mtnD, mtnZ, ADI1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, at 105517 to 106511 16330 mRNA_7963: 16331 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 106769 to 107651 16331

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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104,537 + 16329 mRNA_7961 0.48 -0.5
104,710 + 16329 mRNA_7961 0.67 -0.5
104,817 - 16329 mRNA_7961 0.79 1.9
104,839 - 16329 mRNA_7961 0.82 0.5
104,902 + 16329 mRNA_7961 0.89 0.8
104,918 - 0.5
105,104 + 0.6
105,107 - 1.0
105,107 - 2.5
105,110 + -2.9
105,128 - -0.1
105,149 - 1.6
105,246 + -0.4
105,404 - 0.3
105,420 - 0.1
105,458 - 0.4
105,459 - -0.6
105,563 + 1.4
105,648 - 16330 mRNA_7962 0.13 -0.8
105,700 - 16330 mRNA_7962 0.18 0.8
105,705 + 16330 mRNA_7962 0.19 0.9
105,722 - 16330 mRNA_7962 0.21 0.8
105,788 - 16330 mRNA_7962 0.27 0.7
105,793 + 16330 mRNA_7962 0.28 1.7
105,964 + 16330 mRNA_7962 0.45 -0.4
105,967 - 16330 mRNA_7962 0.45 -0.4
105,980 + 16330 mRNA_7962 0.47 0.1
106,118 + 16330 mRNA_7962 0.60 -2.4
106,124 - 16330 mRNA_7962 0.61 0.1
106,160 + 16330 mRNA_7962 0.65 -1.4
106,166 - 16330 mRNA_7962 0.65 0.3
106,279 + 16330 mRNA_7962 0.77 -0.1
106,282 - 16330 mRNA_7962 0.77 0.2
106,564 + 1.0
106,567 - 1.8
106,574 + -1.8
106,576 - -1.3
106,610 + -0.4
106,660 + 0.1
106,767 + -0.2
106,769 - -0.1
106,862 - 16331 mRNA_7963 0.11 0.5
107,061 + 16331 mRNA_7963 0.33 -1.0
107,263 + 16331 mRNA_7963 0.56 0.2
107,420 + 16331 mRNA_7963 0.74 2.2
107,430 + 16331 mRNA_7963 0.75 -0.4
107,451 - 16331 mRNA_7963 0.77 -1.0
107,467 + 16331 mRNA_7963 0.79 0.2